miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 15724 0.66 0.687757
Target:  5'- gCCGGGCGgcucgucGCGGCagguGCGAcCGACGcGCUUg -3'
miRNA:   3'- -GGCCUGC-------UGCUG----CGCU-GCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 15905 0.7 0.475849
Target:  5'- gCGcGCGACGugGCGccGCGAUGcGCCg -3'
miRNA:   3'- gGCcUGCUGCugCGC--UGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 16060 0.8 0.115336
Target:  5'- gCGGcCGGCGGCGCaccagauacaGGCGGCGAGCCg -3'
miRNA:   3'- gGCCuGCUGCUGCG----------CUGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 16080 0.66 0.709141
Target:  5'- uCCuGAUGACGAaccugaaCGGCG-CGGGCCUg -3'
miRNA:   3'- -GGcCUGCUGCUgc-----GCUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 16583 0.73 0.307679
Target:  5'- uCUGcGGCGGCGACaGUGcCG-CGAGCCCc -3'
miRNA:   3'- -GGC-CUGCUGCUG-CGCuGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 16758 0.72 0.380721
Target:  5'- gUGGGCGcagccaugcgauuucGCGAuCGCGAUGAUcAGCCCg -3'
miRNA:   3'- gGCCUGC---------------UGCU-GCGCUGCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 16798 0.66 0.685708
Target:  5'- nCGGACGGCGAgcucauggaguuccUGC-ACGAC-AGCCg -3'
miRNA:   3'- gGCCUGCUGCU--------------GCGcUGCUGcUCGGg -5'
23941 3' -58 NC_005262.1 + 17044 0.67 0.625792
Target:  5'- cCUGuACGAcCGGCGUGGCGGCGAucgauccggucguGCCg -3'
miRNA:   3'- -GGCcUGCU-GCUGCGCUGCUGCU-------------CGGg -5'
23941 3' -58 NC_005262.1 + 17071 0.68 0.575225
Target:  5'- aCGGcgcCGAUaGGCGCGcccgucgacGCGGCGGGCCg -3'
miRNA:   3'- gGCCu--GCUG-CUGCGC---------UGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 17167 0.68 0.595792
Target:  5'- gCCGGcaaggccgcgcGCGAgGACGCGACcGCGuucagcaaGGCCg -3'
miRNA:   3'- -GGCC-----------UGCUgCUGCGCUGcUGC--------UCGGg -5'
23941 3' -58 NC_005262.1 + 17244 0.67 0.626828
Target:  5'- gUGGGCGucGCGGgaGCGGCGGCcGGCgCCg -3'
miRNA:   3'- gGCCUGC--UGCUg-CGCUGCUGcUCG-GG- -5'
23941 3' -58 NC_005262.1 + 17289 0.66 0.682631
Target:  5'- gCGGGCaggGGCGuCGCGGucggagugcucauguCGACGGGCUg -3'
miRNA:   3'- gGCCUG---CUGCuGCGCU---------------GCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 17340 0.76 0.203691
Target:  5'- gCCGGcGCGGCauucggguccGGCGCGggcggcGCGGCGGGCCCc -3'
miRNA:   3'- -GGCC-UGCUG----------CUGCGC------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 17480 0.67 0.610257
Target:  5'- uCCaGGACGaagcgcgcgccgcgcGCGACGCGuCGAuCGgcAGCCUg -3'
miRNA:   3'- -GG-CCUGC---------------UGCUGCGCuGCU-GC--UCGGG- -5'
23941 3' -58 NC_005262.1 + 17555 0.68 0.554824
Target:  5'- gCGaGGCGGCaGcCGCGGCGGCGcgcgaAGCCg -3'
miRNA:   3'- gGC-CUGCUG-CuGCGCUGCUGC-----UCGGg -5'
23941 3' -58 NC_005262.1 + 17697 0.73 0.314915
Target:  5'- gCCGGcCGugGuCGCuGGCccgaACGAGCCCg -3'
miRNA:   3'- -GGCCuGCugCuGCG-CUGc---UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 17758 0.66 0.709141
Target:  5'- gCGGACGAC-ACGCugcuCGAauuCGAGgCCg -3'
miRNA:   3'- gGCCUGCUGcUGCGcu--GCU---GCUCgGG- -5'
23941 3' -58 NC_005262.1 + 17926 0.68 0.554824
Target:  5'- aUCGG-CGcCGACGCcaACGGCGAGCa- -3'
miRNA:   3'- -GGCCuGCuGCUGCGc-UGCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 17981 0.7 0.438491
Target:  5'- gCCGGAagugcgcaCGuucuuCGACGUGGCuGcCGGGCCCg -3'
miRNA:   3'- -GGCCU--------GCu----GCUGCGCUG-CuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 18557 0.67 0.6579
Target:  5'- gCCGGuCGcCGAguUGcCGGCGuucaggcCGAGCCCg -3'
miRNA:   3'- -GGCCuGCuGCU--GC-GCUGCu------GCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.