miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 63697 0.67 0.603019
Target:  5'- gCCGGugacaugcgcagaaGCGuGCGGCGCGGCcgacuucuucGCGAGCCg -3'
miRNA:   3'- -GGCC--------------UGC-UGCUGCGCUGc---------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 63668 0.7 0.456965
Target:  5'- gCUGGAauugcCGGCGACgGCGACGACGcaaUCCg -3'
miRNA:   3'- -GGCCU-----GCUGCUG-CGCUGCUGCuc-GGG- -5'
23941 3' -58 NC_005262.1 + 63523 0.72 0.337391
Target:  5'- gCCGGAgccgcgaGACGAgGUGACGGaugaacgacCGAGCCUg -3'
miRNA:   3'- -GGCCUg------CUGCUgCGCUGCU---------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 63076 0.71 0.429416
Target:  5'- gCGGGCGAguAUGCGGCGGCGuGCa- -3'
miRNA:   3'- gGCCUGCUgcUGCGCUGCUGCuCGgg -5'
23941 3' -58 NC_005262.1 + 62881 0.71 0.415129
Target:  5'- aUGGGCGACaccaucacccgccaGCGCGcCGACGAGCUg -3'
miRNA:   3'- gGCCUGCUGc-------------UGCGCuGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 62820 0.69 0.514722
Target:  5'- -aGGGCGACGuGC-CGACGAUcGGCCa -3'
miRNA:   3'- ggCCUGCUGC-UGcGCUGCUGcUCGGg -5'
23941 3' -58 NC_005262.1 + 62685 0.74 0.280009
Target:  5'- cCCGG-CGGCGgcaggggaGCGCGACGAUGGGUa- -3'
miRNA:   3'- -GGCCuGCUGC--------UGCGCUGCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 62208 0.74 0.289462
Target:  5'- cCCGGACGA--ACGCGACGaAaucuugcacucgauuCGAGCCUa -3'
miRNA:   3'- -GGCCUGCUgcUGCGCUGC-U---------------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 62125 0.75 0.254354
Target:  5'- gCGGAUGaACGACGacuuugaGGCGAUG-GCCCg -3'
miRNA:   3'- gGCCUGC-UGCUGCg------CUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 61540 0.66 0.69899
Target:  5'- gCGGGcCGucauCGACGCGGCccgaGACuuuGCCCu -3'
miRNA:   3'- gGCCU-GCu---GCUGCGCUG----CUGcu-CGGG- -5'
23941 3' -58 NC_005262.1 + 61462 0.67 0.60612
Target:  5'- gCGGACGGCGAaGCGcuaGACGAcaucuucgcgcgGCCg -3'
miRNA:   3'- gGCCUGCUGCUgCGCug-CUGCU------------CGGg -5'
23941 3' -58 NC_005262.1 + 61180 0.69 0.521661
Target:  5'- aCGGGCGcGCGGCGCuACGAgaaCGAccucacgaaggucaGCCCg -3'
miRNA:   3'- gGCCUGC-UGCUGCGcUGCU---GCU--------------CGGG- -5'
23941 3' -58 NC_005262.1 + 61115 0.71 0.402869
Target:  5'- aCCGGGCGACGAaggggacgGUGuACGACGcGCUg -3'
miRNA:   3'- -GGCCUGCUGCUg-------CGC-UGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 61068 0.69 0.514722
Target:  5'- gCCGGAU-ACGcCGuCGACGaagGCGcAGCCCg -3'
miRNA:   3'- -GGCCUGcUGCuGC-GCUGC---UGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 60835 0.74 0.280009
Target:  5'- gCCGGccuacGCGAuCGGCGUGGCGAUG-GCCg -3'
miRNA:   3'- -GGCC-----UGCU-GCUGCGCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 60601 0.67 0.626828
Target:  5'- cCCGGcgauacagggcACGGCGAacgccaUGCGcacgcuggcgaGCGGCGAGCaCCg -3'
miRNA:   3'- -GGCC-----------UGCUGCU------GCGC-----------UGCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 60080 0.69 0.495112
Target:  5'- gCCGcGCG-CGACGCGcUGACGGGCa- -3'
miRNA:   3'- -GGCcUGCuGCUGCGCuGCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 59724 0.67 0.60612
Target:  5'- gCCGGcaagguguacaACGugGugGaUGGCGGCG-GCCa -3'
miRNA:   3'- -GGCC-----------UGCugCugC-GCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 59687 0.68 0.595792
Target:  5'- gUGGACGAuCGGCGUGcCGccacGCGGGCgCu -3'
miRNA:   3'- gGCCUGCU-GCUGCGCuGC----UGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 59649 0.66 0.69899
Target:  5'- aCUGcACGGCGccACGCGGCGcCGuuuuuuuauGCCCg -3'
miRNA:   3'- -GGCcUGCUGC--UGCGCUGCuGCu--------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.