miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 59445 0.67 0.626828
Target:  5'- -gGGGCuuACGAuCGCGACGGCcgauggacGGCCCg -3'
miRNA:   3'- ggCCUGc-UGCU-GCGCUGCUGc-------UCGGG- -5'
23941 3' -58 NC_005262.1 + 59309 0.75 0.242266
Target:  5'- gCCGGACGGCGGCucggGCauGACGACG-GCUg -3'
miRNA:   3'- -GGCCUGCUGCUG----CG--CUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 59141 0.68 0.591668
Target:  5'- gCCGGGCcGCGuCGCcgcgcgcauggagGACGcgaagaagcagcucACGGGCCCg -3'
miRNA:   3'- -GGCCUGcUGCuGCG-------------CUGC--------------UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 58858 0.69 0.53464
Target:  5'- aUCGG-CGACGucACGC--CGGCGcAGCCCg -3'
miRNA:   3'- -GGCCuGCUGC--UGCGcuGCUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 58796 0.7 0.475849
Target:  5'- gCUGGGuCGACGACGUGAuCGGCGccgugaaggcauGGCUg -3'
miRNA:   3'- -GGCCU-GCUGCUGCGCU-GCUGC------------UCGGg -5'
23941 3' -58 NC_005262.1 + 58652 0.66 0.677495
Target:  5'- gCCGGGCGcGCGA-GUucuACGAucaagccCGAGCCCg -3'
miRNA:   3'- -GGCCUGC-UGCUgCGc--UGCU-------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 58564 0.71 0.428515
Target:  5'- gCGcGGCGuCGACGCcACGGCGAucgugcaggauacGCCCu -3'
miRNA:   3'- gGC-CUGCuGCUGCGcUGCUGCU-------------CGGG- -5'
23941 3' -58 NC_005262.1 + 58279 0.68 0.595792
Target:  5'- uCUGGGCGACGACGaucccggucCGGuCGuCGcGGCCUa -3'
miRNA:   3'- -GGCCUGCUGCUGC---------GCU-GCuGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 58180 0.68 0.544702
Target:  5'- cUCGGGCGAgGuCGCGAacauCGACGccGCCg -3'
miRNA:   3'- -GGCCUGCUgCuGCGCU----GCUGCu-CGGg -5'
23941 3' -58 NC_005262.1 + 57479 0.73 0.329771
Target:  5'- gCGGGCGcCGACgagagGCGGcCGGCGAGCgCa -3'
miRNA:   3'- gGCCUGCuGCUG-----CGCU-GCUGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 57458 0.7 0.447675
Target:  5'- gCCGcGGCGGCGACGauggagguCGAgGGCGAGaagCCg -3'
miRNA:   3'- -GGC-CUGCUGCUGC--------GCUgCUGCUCg--GG- -5'
23941 3' -58 NC_005262.1 + 57267 0.67 0.60612
Target:  5'- cCCGuGAUccGCGAgCGUGACGGCGAGgUCg -3'
miRNA:   3'- -GGC-CUGc-UGCU-GCGCUGCUGCUCgGG- -5'
23941 3' -58 NC_005262.1 + 57217 0.72 0.369137
Target:  5'- gCCGGuCGGCGGCaucGCGACG-CGcGCCg -3'
miRNA:   3'- -GGCCuGCUGCUG---CGCUGCuGCuCGGg -5'
23941 3' -58 NC_005262.1 + 57148 0.76 0.214135
Target:  5'- -aGGACGGCGACGCGAuCGA--AGCgCCg -3'
miRNA:   3'- ggCCUGCUGCUGCGCU-GCUgcUCG-GG- -5'
23941 3' -58 NC_005262.1 + 57042 0.66 0.69287
Target:  5'- cCCGGccacgagcacaACGA-GGCGCG-CGAgauguucgacaagcaCGGGCCCg -3'
miRNA:   3'- -GGCC-----------UGCUgCUGCGCuGCU---------------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 56765 0.66 0.69899
Target:  5'- gUCGGGCGACGAgCGCuacauGAagcUGGCcGGCCUg -3'
miRNA:   3'- -GGCCUGCUGCU-GCG-----CU---GCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 54550 0.67 0.647552
Target:  5'- uCCGGccaGCGACGuCGCcGCGuucGCGAGCg- -3'
miRNA:   3'- -GGCC---UGCUGCuGCGcUGC---UGCUCGgg -5'
23941 3' -58 NC_005262.1 + 54285 0.68 0.595792
Target:  5'- aCCu--CGACGACGUGGCGcgccucucgaacAUGAGCCg -3'
miRNA:   3'- -GGccuGCUGCUGCGCUGC------------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 54056 0.69 0.52365
Target:  5'- aCGGGCGACGAcggcaccgugacCGUGACGAagcgguucaagaaCGA-CCCg -3'
miRNA:   3'- gGCCUGCUGCU------------GCGCUGCU-------------GCUcGGG- -5'
23941 3' -58 NC_005262.1 + 54013 0.66 0.668227
Target:  5'- --cGACGACGAgGCGAUGcugcCGAaCCCa -3'
miRNA:   3'- ggcCUGCUGCUgCGCUGCu---GCUcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.