miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 53905 0.66 0.677495
Target:  5'- gUGGACGggucugcGCGACGCGcugaaGCaGGCGcAGCUCg -3'
miRNA:   3'- gGCCUGC-------UGCUGCGC-----UG-CUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 53842 0.67 0.647552
Target:  5'- aCCGG-CG-CGGCGCGgACGGCaAGCa- -3'
miRNA:   3'- -GGCCuGCuGCUGCGC-UGCUGcUCGgg -5'
23941 3' -58 NC_005262.1 + 53630 0.68 0.585491
Target:  5'- gCCGGGCGucgacaugGACGCGGCauucgccaaGGCGAucgccaaccuGCCCg -3'
miRNA:   3'- -GGCCUGCug------CUGCGCUG---------CUGCU----------CGGG- -5'
23941 3' -58 NC_005262.1 + 53141 0.7 0.466357
Target:  5'- gCCGcGCGAguucuuCGACGCGGCGAuCGGcaacccGCCCu -3'
miRNA:   3'- -GGCcUGCU------GCUGCGCUGCU-GCU------CGGG- -5'
23941 3' -58 NC_005262.1 + 53046 0.67 0.616468
Target:  5'- aCGGGCGuggaguACGACGCGcUGACcGGCgCg -3'
miRNA:   3'- gGCCUGC------UGCUGCGCuGCUGcUCGgG- -5'
23941 3' -58 NC_005262.1 + 52716 0.68 0.544702
Target:  5'- gCCGGACGAgGcCGCGcuGCuGACGaAGUUCa -3'
miRNA:   3'- -GGCCUGCUgCuGCGC--UG-CUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 52392 0.75 0.236404
Target:  5'- cCCGG-CG-CGGCGCGgcuucgGCGugGAGCCg -3'
miRNA:   3'- -GGCCuGCuGCUGCGC------UGCugCUCGGg -5'
23941 3' -58 NC_005262.1 + 52305 0.67 0.647552
Target:  5'- gCCGagcuCGGCGACGCGgcccaugugcucGCGcGCGAGCgCg -3'
miRNA:   3'- -GGCcu--GCUGCUGCGC------------UGC-UGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 52139 0.67 0.60612
Target:  5'- gCCGGccaGCGugcagcGCGACGcCGGCGccgcCGAGCCg -3'
miRNA:   3'- -GGCC---UGC------UGCUGC-GCUGCu---GCUCGGg -5'
23941 3' -58 NC_005262.1 + 52105 0.72 0.369137
Target:  5'- aCGGACGACcucgGCGACGcCGugaAGCCCu -3'
miRNA:   3'- gGCCUGCUGcug-CGCUGCuGC---UCGGG- -5'
23941 3' -58 NC_005262.1 + 52034 0.68 0.544702
Target:  5'- aCGGcAUGACGAuCGcCGGCGccuacauCGAGUCCg -3'
miRNA:   3'- gGCC-UGCUGCU-GC-GCUGCu------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 51861 0.72 0.345138
Target:  5'- gCGGcgccGCGaACGACGCGAgcaCGAcCGAGCCg -3'
miRNA:   3'- gGCC----UGC-UGCUGCGCU---GCU-GCUCGGg -5'
23941 3' -58 NC_005262.1 + 51815 0.67 0.60612
Target:  5'- cUCGG-CGACGacuucaGCGCGGcCGACGuGCgCg -3'
miRNA:   3'- -GGCCuGCUGC------UGCGCU-GCUGCuCGgG- -5'
23941 3' -58 NC_005262.1 + 51422 0.72 0.377387
Target:  5'- cUCGG-CGGCGcGCGCGAgGGCGAuaCCg -3'
miRNA:   3'- -GGCCuGCUGC-UGCGCUgCUGCUcgGG- -5'
23941 3' -58 NC_005262.1 + 51223 0.66 0.69899
Target:  5'- gCCGG-CGGCaGCaGCagcuCGACGAGCgCCg -3'
miRNA:   3'- -GGCCuGCUGcUG-CGcu--GCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 51180 0.75 0.248249
Target:  5'- -aGGcagcCGACGACGCGGCGGCccgcugGAGCCg -3'
miRNA:   3'- ggCCu---GCUGCUGCGCUGCUG------CUCGGg -5'
23941 3' -58 NC_005262.1 + 50845 0.67 0.637192
Target:  5'- gCCGGuCGGCGAUGCcGuCG-CGcacGCCCu -3'
miRNA:   3'- -GGCCuGCUGCUGCG-CuGCuGCu--CGGG- -5'
23941 3' -58 NC_005262.1 + 50754 0.67 0.637192
Target:  5'- aUCGGcCGcagcuCGACGCGcACcGCGuAGCCCu -3'
miRNA:   3'- -GGCCuGCu----GCUGCGC-UGcUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 50386 0.75 0.230661
Target:  5'- aCCGuGGCGACGcgaaccGCGCGGCGAUcAGCgCCg -3'
miRNA:   3'- -GGC-CUGCUGC------UGCGCUGCUGcUCG-GG- -5'
23941 3' -58 NC_005262.1 + 50344 0.66 0.68878
Target:  5'- -aGGACGaaGCGccCGCGACGaccGCGAGCg- -3'
miRNA:   3'- ggCCUGC--UGCu-GCGCUGC---UGCUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.