Results 1 - 20 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23941 | 3' | -58 | NC_005262.1 | + | 62125 | 0.75 | 0.254354 |
Target: 5'- gCGGAUGaACGACGacuuugaGGCGAUG-GCCCg -3' miRNA: 3'- gGCCUGC-UGCUGCg------CUGCUGCuCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 50386 | 0.75 | 0.230661 |
Target: 5'- aCCGuGGCGACGcgaaccGCGCGGCGAUcAGCgCCg -3' miRNA: 3'- -GGC-CUGCUGC------UGCGCUGCUGcUCG-GG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 29952 | 0.75 | 0.230661 |
Target: 5'- cCCGGACG-CGG-GCGGCGGCGAagguGCCa -3' miRNA: 3'- -GGCCUGCuGCUgCGCUGCUGCU----CGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 33180 | 0.75 | 0.232944 |
Target: 5'- gCCGGGCaaGAccuaccacuuugcgcCGACGCagGACGACGAGCgCCa -3' miRNA: 3'- -GGCCUG--CU---------------GCUGCG--CUGCUGCUCG-GG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 28227 | 0.75 | 0.236404 |
Target: 5'- aCGG-CGAUGACGCGAUGGauucGCCCg -3' miRNA: 3'- gGCCuGCUGCUGCGCUGCUgcu-CGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 49908 | 0.75 | 0.238734 |
Target: 5'- gUCGG-CGACGACGggcagcaguaccgccUGACGACcGGCCCg -3' miRNA: 3'- -GGCCuGCUGCUGC---------------GCUGCUGcUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 43692 | 0.75 | 0.242266 |
Target: 5'- gCCGGGcCGAauucGCGCGGCGACGcGCUCa -3' miRNA: 3'- -GGCCU-GCUgc--UGCGCUGCUGCuCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 59309 | 0.75 | 0.242266 |
Target: 5'- gCCGGACGGCGGCucggGCauGACGACG-GCUg -3' miRNA: 3'- -GGCCUGCUGCUG----CG--CUGCUGCuCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 51180 | 0.75 | 0.248249 |
Target: 5'- -aGGcagcCGACGACGCGGCGGCccgcugGAGCCg -3' miRNA: 3'- ggCCu---GCUGCUGCGCUGCUG------CUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 6773 | 0.75 | 0.230093 |
Target: 5'- gCCGGGC-ACGAUGCcgauGAucuugaagucgaaCGACGAGCCCa -3' miRNA: 3'- -GGCCUGcUGCUGCG----CU-------------GCUGCUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 42754 | 0.75 | 0.22448 |
Target: 5'- aCGGcACGACGAucgugguCGCGACGgACGgccAGCCCu -3' miRNA: 3'- gGCC-UGCUGCU-------GCGCUGC-UGC---UCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 30070 | 0.76 | 0.198636 |
Target: 5'- gCCGGcgACGACGACGCcggcaagaagGGCGACGAcacGCCg -3' miRNA: 3'- -GGCC--UGCUGCUGCG----------CUGCUGCU---CGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 46763 | 0.82 | 0.083683 |
Target: 5'- gCCGGucguacagGCGGCGACGCGcgguaucaacgGCGGCGAGCCg -3' miRNA: 3'- -GGCC--------UGCUGCUGCGC-----------UGCUGCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 21627 | 0.82 | 0.085969 |
Target: 5'- cCCGGaguGCGACGGCGaCGGCGACG-GCCa -3' miRNA: 3'- -GGCC---UGCUGCUGC-GCUGCUGCuCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 5071 | 0.81 | 0.093186 |
Target: 5'- cCCGcGGCGGCGGCGCGuGCGACcGGCUCg -3' miRNA: 3'- -GGC-CUGCUGCUGCGC-UGCUGcUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 23354 | 0.8 | 0.11232 |
Target: 5'- aCGGcCGGCGugaagcGCGCGGCGGCGAagGCCCg -3' miRNA: 3'- gGCCuGCUGC------UGCGCUGCUGCU--CGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 30030 | 0.78 | 0.146079 |
Target: 5'- gUCGGACGACGACGCaGCaGCGGGCa- -3' miRNA: 3'- -GGCCUGCUGCUGCGcUGcUGCUCGgg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 34003 | 0.78 | 0.162015 |
Target: 5'- aUGGGCgcgGACGGCGUGACGcCGGGCCg -3' miRNA: 3'- gGCCUG---CUGCUGCGCUGCuGCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 25194 | 0.77 | 0.179499 |
Target: 5'- -aGGGCGACGACcaggaCGACGACGAagggcucgugcuGCCCu -3' miRNA: 3'- ggCCUGCUGCUGc----GCUGCUGCU------------CGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 48485 | 0.77 | 0.179499 |
Target: 5'- gUGGGCacgGGCGGCGCGACGGC-AGCCg -3' miRNA: 3'- gGCCUG---CUGCUGCGCUGCUGcUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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