Results 41 - 60 of 275 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23941 | 3' | -58 | NC_005262.1 | + | 30030 | 0.78 | 0.146079 |
Target: 5'- gUCGGACGACGACGCaGCaGCGGGCa- -3' miRNA: 3'- -GGCCUGCUGCUGCGcUGcUGCUCGgg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 23354 | 0.8 | 0.11232 |
Target: 5'- aCGGcCGGCGugaagcGCGCGGCGGCGAagGCCCg -3' miRNA: 3'- gGCCuGCUGC------UGCGCUGCUGCU--CGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 5071 | 0.81 | 0.093186 |
Target: 5'- cCCGcGGCGGCGGCGCGuGCGACcGGCUCg -3' miRNA: 3'- -GGC-CUGCUGCUGCGC-UGCUGcUCGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 21627 | 0.82 | 0.085969 |
Target: 5'- cCCGGaguGCGACGGCGaCGGCGACG-GCCa -3' miRNA: 3'- -GGCC---UGCUGCUGC-GCUGCUGCuCGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 46763 | 0.82 | 0.083683 |
Target: 5'- gCCGGucguacagGCGGCGACGCGcgguaucaacgGCGGCGAGCCg -3' miRNA: 3'- -GGCC--------UGCUGCUGCGC-----------UGCUGCUCGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 33180 | 0.75 | 0.232944 |
Target: 5'- gCCGGGCaaGAccuaccacuuugcgcCGACGCagGACGACGAGCgCCa -3' miRNA: 3'- -GGCCUG--CU---------------GCUGCG--CUGCUGCUCG-GG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 28227 | 0.75 | 0.236404 |
Target: 5'- aCGG-CGAUGACGCGAUGGauucGCCCg -3' miRNA: 3'- gGCCuGCUGCUGCGCUGCUgcu-CGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 14456 | 0.73 | 0.307679 |
Target: 5'- cCCGGACGGCuacaccGAUGUcccguaucACGGCGAGCCUg -3' miRNA: 3'- -GGCCUGCUG------CUGCGc-------UGCUGCUCGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 49719 | 0.73 | 0.29359 |
Target: 5'- gCCGGGCGGCGAacCGGCGGcCGaAGCCg -3' miRNA: 3'- -GGCCUGCUGCUgcGCUGCU-GC-UCGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 62685 | 0.74 | 0.280009 |
Target: 5'- cCCGG-CGGCGgcaggggaGCGCGACGAUGGGUa- -3' miRNA: 3'- -GGCCuGCUGC--------UGCGCUGCUGCUCGgg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 33525 | 0.74 | 0.280009 |
Target: 5'- cCUGGACGACGAgGCGAUcGCGA-CCa -3' miRNA: 3'- -GGCCUGCUGCUgCGCUGcUGCUcGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 60835 | 0.74 | 0.280009 |
Target: 5'- gCCGGccuacGCGAuCGGCGUGGCGAUG-GCCg -3' miRNA: 3'- -GGCC-----UGCU-GCUGCGCUGCUGCuCGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 7523 | 0.74 | 0.280009 |
Target: 5'- aUCGGGCagguucGGCGGCGCGuCGGCGcGCUCg -3' miRNA: 3'- -GGCCUG------CUGCUGCGCuGCUGCuCGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 31926 | 0.74 | 0.271452 |
Target: 5'- gCCGGACGucgccaccugcuguACGGCgguGUGGCGACGAGCa- -3' miRNA: 3'- -GGCCUGC--------------UGCUG---CGCUGCUGCUCGgg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 27868 | 0.74 | 0.266932 |
Target: 5'- -aGGACGGCGGCaaGGCGGcCGAGCgCa -3' miRNA: 3'- ggCCUGCUGCUGcgCUGCU-GCUCGgG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 62125 | 0.75 | 0.254354 |
Target: 5'- gCGGAUGaACGACGacuuugaGGCGAUG-GCCCg -3' miRNA: 3'- gGCCUGC-UGCUGCg------CUGCUGCuCGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 51180 | 0.75 | 0.248249 |
Target: 5'- -aGGcagcCGACGACGCGGCGGCccgcugGAGCCg -3' miRNA: 3'- ggCCu---GCUGCUGCGCUGCUG------CUCGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 59309 | 0.75 | 0.242266 |
Target: 5'- gCCGGACGGCGGCucggGCauGACGACG-GCUg -3' miRNA: 3'- -GGCCUGCUGCUG----CG--CUGCUGCuCGGg -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 43692 | 0.75 | 0.242266 |
Target: 5'- gCCGGGcCGAauucGCGCGGCGACGcGCUCa -3' miRNA: 3'- -GGCCU-GCUgc--UGCGCUGCUGCuCGGG- -5' |
|||||||
23941 | 3' | -58 | NC_005262.1 | + | 49908 | 0.75 | 0.238734 |
Target: 5'- gUCGG-CGACGACGggcagcaguaccgccUGACGACcGGCCCg -3' miRNA: 3'- -GGCCuGCUGCUGC---------------GCUGCUGcUCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home