Results 61 - 80 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23941 | 3' | -58 | NC_005262.1 | + | 51180 | 0.75 | 0.248249 |
Target: 5'- -aGGcagcCGACGACGCGGCGGCccgcugGAGCCg -3' miRNA: 3'- ggCCu---GCUGCUGCGCUGCUG------CUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 62125 | 0.75 | 0.254354 |
Target: 5'- gCGGAUGaACGACGacuuugaGGCGAUG-GCCCg -3' miRNA: 3'- gGCCUGC-UGCUGCg------CUGCUGCuCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 17697 | 0.73 | 0.314915 |
Target: 5'- gCCGGcCGugGuCGCuGGCccgaACGAGCCCg -3' miRNA: 3'- -GGCCuGCugCuGCG-CUGc---UGCUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 23406 | 0.73 | 0.314915 |
Target: 5'- --aGGCGGCGAUGCGGCGGgcagcaUGAGCCg -3' miRNA: 3'- ggcCUGCUGCUGCGCUGCU------GCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 7625 | 0.73 | 0.320796 |
Target: 5'- aCCGGACGuuggccgaauguCGACGcCGGCGGCGAcgGCUa -3' miRNA: 3'- -GGCCUGCu-----------GCUGC-GCUGCUGCU--CGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 50295 | 0.73 | 0.322279 |
Target: 5'- cCCGuGACGGCcGCGCGGauUGAgGAGCCg -3' miRNA: 3'- -GGC-CUGCUGcUGCGCU--GCUgCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 10461 | 0.73 | 0.329771 |
Target: 5'- gCCGGgcggaagccGCGACGACaGCGGCGACcAGCa- -3' miRNA: 3'- -GGCC---------UGCUGCUG-CGCUGCUGcUCGgg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 47068 | 0.72 | 0.337391 |
Target: 5'- --cGACGACGGCGUGACGccCGuGUCCa -3' miRNA: 3'- ggcCUGCUGCUGCGCUGCu-GCuCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 51861 | 0.72 | 0.345138 |
Target: 5'- gCGGcgccGCGaACGACGCGAgcaCGAcCGAGCCg -3' miRNA: 3'- gGCC----UGC-UGCUGCGCU---GCU-GCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 12915 | 0.72 | 0.361011 |
Target: 5'- gCUGGACGACGACaaccuGCG-CGGCGcGCUg -3' miRNA: 3'- -GGCCUGCUGCUG-----CGCuGCUGCuCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 28005 | 0.73 | 0.314915 |
Target: 5'- -aGGACGA-GAa-CGACGGCGAGCCg -3' miRNA: 3'- ggCCUGCUgCUgcGCUGCUGCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 37437 | 0.73 | 0.307679 |
Target: 5'- aUCGcGuCGACaACGCGAUGAUGGGCCg -3' miRNA: 3'- -GGC-CuGCUGcUGCGCUGCUGCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 27868 | 0.74 | 0.266932 |
Target: 5'- -aGGACGGCGGCaaGGCGGcCGAGCgCa -3' miRNA: 3'- ggCCUGCUGCUGcgCUGCU-GCUCGgG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 31926 | 0.74 | 0.271452 |
Target: 5'- gCCGGACGucgccaccugcuguACGGCgguGUGGCGACGAGCa- -3' miRNA: 3'- -GGCCUGC--------------UGCUG---CGCUGCUGCUCGgg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 7523 | 0.74 | 0.280009 |
Target: 5'- aUCGGGCagguucGGCGGCGCGuCGGCGcGCUCg -3' miRNA: 3'- -GGCCUG------CUGCUGCGCuGCUGCuCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 60835 | 0.74 | 0.280009 |
Target: 5'- gCCGGccuacGCGAuCGGCGUGGCGAUG-GCCg -3' miRNA: 3'- -GGCC-----UGCU-GCUGCGCUGCUGCuCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 33525 | 0.74 | 0.280009 |
Target: 5'- cCUGGACGACGAgGCGAUcGCGA-CCa -3' miRNA: 3'- -GGCCUGCUGCUgCGCUGcUGCUcGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 62685 | 0.74 | 0.280009 |
Target: 5'- cCCGG-CGGCGgcaggggaGCGCGACGAUGGGUa- -3' miRNA: 3'- -GGCCuGCUGC--------UGCGCUGCUGCUCGgg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 49719 | 0.73 | 0.29359 |
Target: 5'- gCCGGGCGGCGAacCGGCGGcCGaAGCCg -3' miRNA: 3'- -GGCCUGCUGCUgcGCUGCU-GC-UCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 14456 | 0.73 | 0.307679 |
Target: 5'- cCCGGACGGCuacaccGAUGUcccguaucACGGCGAGCCUg -3' miRNA: 3'- -GGCCUGCUG------CUGCGc-------UGCUGCUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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