miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 57267 0.67 0.60612
Target:  5'- cCCGuGAUccGCGAgCGUGACGGCGAGgUCg -3'
miRNA:   3'- -GGC-CUGc-UGCU-GCGCUGCUGCUCgGG- -5'
23941 3' -58 NC_005262.1 + 6262 0.66 0.668227
Target:  5'- aCCGGuACGACcuGAuCGCGGuCGAU--GCCCg -3'
miRNA:   3'- -GGCC-UGCUG--CU-GCGCU-GCUGcuCGGG- -5'
23941 3' -58 NC_005262.1 + 19269 0.66 0.719226
Target:  5'- -aGGAgguaGACGaucaGCGCGGCGAUcaggcuGGCCCa -3'
miRNA:   3'- ggCCUg---CUGC----UGCGCUGCUGc-----UCGGG- -5'
23941 3' -58 NC_005262.1 + 4658 0.67 0.616468
Target:  5'- gCGcGCGGCGACGCGGCccGGCcGGUUCg -3'
miRNA:   3'- gGCcUGCUGCUGCGCUG--CUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 38575 0.66 0.719226
Target:  5'- uUCGGGCGGaaGgGCaGC-ACGAGCCCu -3'
miRNA:   3'- -GGCCUGCUgcUgCGcUGcUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 7545 0.7 0.475849
Target:  5'- uCCGuGAaGAUGAUGUG-CGACGcGCCCu -3'
miRNA:   3'- -GGC-CUgCUGCUGCGCuGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 31880 0.66 0.709141
Target:  5'- gUGGuCGACGuccgGCGCGuCGAgCGGguuGCCCg -3'
miRNA:   3'- gGCCuGCUGC----UGCGCuGCU-GCU---CGGG- -5'
23941 3' -58 NC_005262.1 + 12222 0.69 0.501938
Target:  5'- aUGGGCGGCGcgcucaagcuccgcGCGCGACcacgugguacGCGAGCCg -3'
miRNA:   3'- gGCCUGCUGC--------------UGCGCUGc---------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 22707 0.69 0.514722
Target:  5'- gUGGcCGGCGGCGuUGACGAgCGuGCCg -3'
miRNA:   3'- gGCCuGCUGCUGC-GCUGCU-GCuCGGg -5'
23941 3' -58 NC_005262.1 + 35353 0.68 0.565
Target:  5'- aUCGGcgacACGGCGA-GC-ACGGCGcGGCCCg -3'
miRNA:   3'- -GGCC----UGCUGCUgCGcUGCUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 10624 0.68 0.585491
Target:  5'- --cGACGACgGACGCGAagGGCGGGUugCCg -3'
miRNA:   3'- ggcCUGCUG-CUGCGCUg-CUGCUCG--GG- -5'
23941 3' -58 NC_005262.1 + 58279 0.68 0.595792
Target:  5'- uCUGGGCGACGACGaucccggucCGGuCGuCGcGGCCUa -3'
miRNA:   3'- -GGCCUGCUGCUGC---------GCU-GCuGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 7743 0.67 0.60612
Target:  5'- -aGGAUGAUGuccUGCcccuucuGCGGCGGGCCCu -3'
miRNA:   3'- ggCCUGCUGCu--GCGc------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 59445 0.67 0.626828
Target:  5'- -gGGGCuuACGAuCGCGACGGCcgauggacGGCCCg -3'
miRNA:   3'- ggCCUGc-UGCU-GCGCUGCUGc-------UCGGG- -5'
23941 3' -58 NC_005262.1 + 30417 0.67 0.637192
Target:  5'- gCUGGGCGGCGuCGaCGAUcACG-GCCg -3'
miRNA:   3'- -GGCCUGCUGCuGC-GCUGcUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 52305 0.67 0.647552
Target:  5'- gCCGagcuCGGCGACGCGgcccaugugcucGCGcGCGAGCgCg -3'
miRNA:   3'- -GGCcu--GCUGCUGCGC------------UGC-UGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 34497 0.66 0.668227
Target:  5'- uCUGGcCGuucACGGCGCGgauGCGcuucACGAGCUCg -3'
miRNA:   3'- -GGCCuGC---UGCUGCGC---UGC----UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 15724 0.66 0.687757
Target:  5'- gCCGGGCGgcucgucGCGGCagguGCGAcCGACGcGCUUg -3'
miRNA:   3'- -GGCCUGC-------UGCUG----CGCU-GCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 30179 0.66 0.69899
Target:  5'- gCCGGcggcuuuuccuGCGACGuCGgGGCGACugcgguGGCCUc -3'
miRNA:   3'- -GGCC-----------UGCUGCuGCgCUGCUGc-----UCGGG- -5'
23941 3' -58 NC_005262.1 + 30708 0.66 0.706102
Target:  5'- aCGGAUGGaaagacccucccgcCGugGCGAgaggguCGA-GGGCCCg -3'
miRNA:   3'- gGCCUGCU--------------GCugCGCU------GCUgCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.