miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 19390 0.66 0.644429
Target:  5'- cUGGAUGGaUGCCGCCcagaggcuggAUGAAugugcccccgcagucGCGGCa -3'
miRNA:   3'- cAUCUGCCaGCGGCGG----------UGCUU---------------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 23672 0.66 0.640175
Target:  5'- cGUGGA----UGCCGCC-CGA-GCGGCg -3'
miRNA:   3'- -CAUCUgccaGCGGCGGuGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 38234 0.66 0.640175
Target:  5'- -cAGACGGcUGCCGUCugGuuGgGaGCg -3'
miRNA:   3'- caUCUGCCaGCGGCGGugCuuCgC-CG- -5'
23942 5' -58.1 NC_005262.1 + 41172 0.66 0.640175
Target:  5'- -aGGAgGG-CaCCGCCGCGAucGCGuGCg -3'
miRNA:   3'- caUCUgCCaGcGGCGGUGCUu-CGC-CG- -5'
23942 5' -58.1 NC_005262.1 + 57116 0.66 0.640175
Target:  5'- --cGACGGgcuccaguucCGCCGCUcguggauCGAGGaCGGCg -3'
miRNA:   3'- cauCUGCCa---------GCGGCGGu------GCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 30584 0.66 0.629538
Target:  5'- -aGGACGGcaagacCGCCaaGCCGCuGAAG-GGCg -3'
miRNA:   3'- caUCUGCCa-----GCGG--CGGUG-CUUCgCCG- -5'
23942 5' -58.1 NC_005262.1 + 13150 0.66 0.629538
Target:  5'- cUGGAgcCGGUUGCUGCUc---GGCGGCg -3'
miRNA:   3'- cAUCU--GCCAGCGGCGGugcuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12614 0.66 0.629538
Target:  5'- ---aGCGG--GCCGCCGCGucGuCGGCu -3'
miRNA:   3'- caucUGCCagCGGCGGUGCuuC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 14436 0.66 0.629538
Target:  5'- ---cGCGcGUCGCCGagucgucaGCGAGcGCGGCg -3'
miRNA:   3'- caucUGC-CAGCGGCgg------UGCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48834 0.66 0.629538
Target:  5'- -aAGGgGGuUCGCCGUCuuuucCGAAGgGGUu -3'
miRNA:   3'- caUCUgCC-AGCGGCGGu----GCUUCgCCG- -5'
23942 5' -58.1 NC_005262.1 + 60351 0.66 0.623156
Target:  5'- -cGGGCGGUUcgagcugauccccgaGCgCGCUgaaGCGAuGCGGCu -3'
miRNA:   3'- caUCUGCCAG---------------CG-GCGG---UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 45896 0.66 0.618902
Target:  5'- --cGGCGGcUCGCCGaaAUcGGGCGGUg -3'
miRNA:   3'- cauCUGCC-AGCGGCggUGcUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 42191 0.66 0.618902
Target:  5'- gGgcGACGGcgCGCCGaagAUGAucgucGGCGGCa -3'
miRNA:   3'- -CauCUGCCa-GCGGCgg-UGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 31095 0.66 0.618902
Target:  5'- --cGAUGauGUCGCCcaCCugGAGGcCGGCg -3'
miRNA:   3'- cauCUGC--CAGCGGc-GGugCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 16026 0.66 0.618902
Target:  5'- -gAGcACGGggagcccgCGCgaugccggguuCGCCGCGGccGGCGGCg -3'
miRNA:   3'- caUC-UGCCa-------GCG-----------GCGGUGCU--UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 38541 0.66 0.618902
Target:  5'- ---cACGGUCGCgGUgACGAu-CGGCa -3'
miRNA:   3'- caucUGCCAGCGgCGgUGCUucGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16404 0.66 0.618902
Target:  5'- -cGGcCGGcCGCCgggauucugcGCCGCGAGGC-GCa -3'
miRNA:   3'- caUCuGCCaGCGG----------CGGUGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 57422 0.66 0.615713
Target:  5'- -aAGGCGGcCGacaacgcuccggcaCCGuCCGCGGAugccGCGGCg -3'
miRNA:   3'- caUCUGCCaGC--------------GGC-GGUGCUU----CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 23378 0.66 0.612526
Target:  5'- -cAGAUuuucaGGUCGCCGaCgcgcggcugaauccgCGCGAAcGCGGCa -3'
miRNA:   3'- caUCUG-----CCAGCGGC-G---------------GUGCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 43463 0.66 0.608278
Target:  5'- -cGGAuCGaGUCgaGCCGCUuCGuGGCGGCg -3'
miRNA:   3'- caUCU-GC-CAG--CGGCGGuGCuUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.