Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23942 | 5' | -58.1 | NC_005262.1 | + | 28620 | 0.67 | 0.566051 |
Target: 5'- --cGGCGGUCgugaccucauuGCCGCCAgcgucgccCGGaucGGCGGUa -3' miRNA: 3'- cauCUGCCAG-----------CGGCGGU--------GCU---UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 59468 | 0.67 | 0.576551 |
Target: 5'- aUGGACGGcccgcgaggcUCGCCGUagucgACGAugAGgGGCg -3' miRNA: 3'- cAUCUGCC----------AGCGGCGg----UGCU--UCgCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 21800 | 0.67 | 0.555601 |
Target: 5'- -gAGGCGGgCGuUCGUCGCGuucugcGCGGCg -3' miRNA: 3'- caUCUGCCaGC-GGCGGUGCuu----CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 27833 | 0.67 | 0.555601 |
Target: 5'- -cGGcCGGUCugacuucaagguGCUGCCGCGucgcaaggacGGCGGCa -3' miRNA: 3'- caUCuGCCAG------------CGGCGGUGCu---------UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 6338 | 0.67 | 0.566051 |
Target: 5'- --cGACcuccaucGUCGCCGCCGCGGcauccGCGGa -3' miRNA: 3'- cauCUGc------CAGCGGCGGUGCUu----CGCCg -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 30158 | 0.67 | 0.555601 |
Target: 5'- --cGGCGGaUGCCGaCGCGAAGCugaaggagaucGGCg -3' miRNA: 3'- cauCUGCCaGCGGCgGUGCUUCG-----------CCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 8278 | 0.67 | 0.563957 |
Target: 5'- -aGGAagcugcccgCGUCGCuCGCGAGGCGGCc -3' miRNA: 3'- caUCUgcca-----GCGGCG-GUGCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 52386 | 0.67 | 0.555601 |
Target: 5'- --cGGCGG-C-CCGgCGCGgcGCGGCu -3' miRNA: 3'- cauCUGCCaGcGGCgGUGCuuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 7860 | 0.67 | 0.555601 |
Target: 5'- --uGACGGcCGCCGCCcuCGAucgccGGaCGGUc -3' miRNA: 3'- cauCUGCCaGCGGCGGu-GCU-----UC-GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 187 | 0.67 | 0.553518 |
Target: 5'- -cGGACGGcuucaugguccaCGCCGgCG-GggGCGGCg -3' miRNA: 3'- caUCUGCCa-----------GCGGCgGUgCuuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 51242 | 0.67 | 0.545208 |
Target: 5'- --cGACGaG-CGCCGCCGCGAccuGCcGCc -3' miRNA: 3'- cauCUGC-CaGCGGCGGUGCUu--CGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 37157 | 0.67 | 0.545208 |
Target: 5'- -cAGGCGGUgCGCCaGCUACGcGGGC-GCu -3' miRNA: 3'- caUCUGCCA-GCGG-CGGUGC-UUCGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 18592 | 0.67 | 0.545208 |
Target: 5'- --cGGCGGacaUGCCGCCuGCGAGGgcaGGCc -3' miRNA: 3'- cauCUGCCa--GCGGCGG-UGCUUCg--CCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 7036 | 0.67 | 0.545208 |
Target: 5'- uGUAG-CGcUCGUCGCC-CGAcgccagcgcGGCGGCc -3' miRNA: 3'- -CAUCuGCcAGCGGCGGuGCU---------UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 31249 | 0.67 | 0.545208 |
Target: 5'- -aGGAaucaGGguugaGCCGCC-CGAAgGCGGCc -3' miRNA: 3'- caUCUg---CCag---CGGCGGuGCUU-CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 41571 | 0.67 | 0.559775 |
Target: 5'- cGUGGGCGG-CGCgGCCgugagcuugucgagcGCGAGccCGGCg -3' miRNA: 3'- -CAUCUGCCaGCGgCGG---------------UGCUUc-GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 14252 | 0.67 | 0.524619 |
Target: 5'- -aGGACGcagCGUCGCCggagACgGAAGUGGCa -3' miRNA: 3'- caUCUGCca-GCGGCGG----UG-CUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 11089 | 0.67 | 0.555601 |
Target: 5'- -aGGGCGGccCGCUGgCACGcuuGGCGGg -3' miRNA: 3'- caUCUGCCa-GCGGCgGUGCu--UCGCCg -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 62545 | 0.67 | 0.555601 |
Target: 5'- uUGGGCGGUUGUggggaucaCGuCCugGucggAGGCGGCg -3' miRNA: 3'- cAUCUGCCAGCG--------GC-GGugC----UUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 24188 | 0.67 | 0.555601 |
Target: 5'- --cGGCGaGUUcaCGCC-CGAGGCGGCa -3' miRNA: 3'- cauCUGC-CAGcgGCGGuGCUUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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