Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23942 | 5' | -58.1 | NC_005262.1 | + | 47564 | 0.72 | 0.281045 |
Target: 5'- -aAGGCGa-CGUCGCCcgacgaaGCGAAGCGGCu -3' miRNA: 3'- caUCUGCcaGCGGCGG-------UGCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 22607 | 0.72 | 0.295746 |
Target: 5'- ---aGCGGUCGCCGggcgcgcaCGCGAucGCGGCg -3' miRNA: 3'- caucUGCCAGCGGCg-------GUGCUu-CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 47284 | 0.72 | 0.295746 |
Target: 5'- ---aACGGaCGCCGCgGCGAAGauCGGCg -3' miRNA: 3'- caucUGCCaGCGGCGgUGCUUC--GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 53326 | 0.72 | 0.288672 |
Target: 5'- ----cUGGUCGCCGCUGuCGucGCGGCu -3' miRNA: 3'- caucuGCCAGCGGCGGU-GCuuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 14047 | 0.71 | 0.349024 |
Target: 5'- -gGGcGCGGgCGCCGCCGgCGucgguGCGGCu -3' miRNA: 3'- caUC-UGCCaGCGGCGGU-GCuu---CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 10639 | 0.71 | 0.325383 |
Target: 5'- -aGGGCGGguugccgaUCGCCGCguCGAAgaacucgcGCGGCa -3' miRNA: 3'- caUCUGCC--------AGCGGCGguGCUU--------CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 5591 | 0.71 | 0.357172 |
Target: 5'- -cGGGCGG-CGCCGCUcuccgcagGCGAcGCGGa -3' miRNA: 3'- caUCUGCCaGCGGCGG--------UGCUuCGCCg -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 60378 | 0.71 | 0.357172 |
Target: 5'- cGgcGAaGGUCGCCgGCCGCaaGAucgucGGCGGCa -3' miRNA: 3'- -CauCUgCCAGCGG-CGGUG--CU-----UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 32534 | 0.7 | 0.373864 |
Target: 5'- -cGGACGG--GCCGCCuuCGG-GCGGCu -3' miRNA: 3'- caUCUGCCagCGGCGGu-GCUuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 38524 | 0.7 | 0.408799 |
Target: 5'- -aGGAUcaGGUUGCggUGCCA-GAGGCGGCg -3' miRNA: 3'- caUCUG--CCAGCG--GCGGUgCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 16361 | 0.7 | 0.365452 |
Target: 5'- --uGAuCGG-CGCCGCCGCGuu-CGGCa -3' miRNA: 3'- cauCU-GCCaGCGGCGGUGCuucGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 2373 | 0.7 | 0.373864 |
Target: 5'- cGUGGAauuccuCGGcCGCCGCCuucgccucgcgcGCGAggucguaguAGCGGCu -3' miRNA: 3'- -CAUCU------GCCaGCGGCGG------------UGCU---------UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 535 | 0.7 | 0.408799 |
Target: 5'- -cAGGCGG-CgGCUGCCACGA--UGGCg -3' miRNA: 3'- caUCUGCCaG-CGGCGGUGCUucGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 7375 | 0.7 | 0.368801 |
Target: 5'- --cGACGGUCggGCCGUCcuugaucuugcagagGCuGAAGCGGCc -3' miRNA: 3'- cauCUGCCAG--CGGCGG---------------UG-CUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 14004 | 0.7 | 0.373017 |
Target: 5'- -cGGACGGUgcaggggCGuCCGgCGCGGcAGCGGCc -3' miRNA: 3'- caUCUGCCA-------GC-GGCgGUGCU-UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 28714 | 0.7 | 0.382406 |
Target: 5'- --cGACGaGUU-CCGCCGCGAGGCcGCg -3' miRNA: 3'- cauCUGC-CAGcGGCGGUGCUUCGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 57477 | 0.7 | 0.373864 |
Target: 5'- --cGGCGGgCGCCGaCGaGAGGCGGCc -3' miRNA: 3'- cauCUGCCaGCGGCgGUgCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 12425 | 0.7 | 0.399876 |
Target: 5'- -gAGACGGUaGCCGagcCGAuGCGGCg -3' miRNA: 3'- caUCUGCCAgCGGCgguGCUuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 14304 | 0.7 | 0.408799 |
Target: 5'- cGUGGACGGgagggCGgcggaaCCGCCgaGCuGGGCGGCg -3' miRNA: 3'- -CAUCUGCCa----GC------GGCGG--UGcUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 27957 | 0.7 | 0.408799 |
Target: 5'- cUGGGCGGUCGCggCGCCgACGccGCuccGGCc -3' miRNA: 3'- cAUCUGCCAGCG--GCGG-UGCuuCG---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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