miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 20318 1.11 0.000494
Target:  5'- cGUAGACGGUCGCCGCCACGAAGCGGCu -3'
miRNA:   3'- -CAUCUGCCAGCGGCGGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 10463 0.8 0.091017
Target:  5'- -cGGGCGGaaGCCGCgACGAcAGCGGCg -3'
miRNA:   3'- caUCUGCCagCGGCGgUGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21183 0.8 0.093559
Target:  5'- --cGACGaUCGCCGCaugACGGAGCGGCa -3'
miRNA:   3'- cauCUGCcAGCGGCGg--UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47502 0.79 0.104412
Target:  5'- --cGAuCGGUUGCaCGCCGCGA-GCGGCg -3'
miRNA:   3'- cauCU-GCCAGCG-GCGGUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 52934 0.79 0.107012
Target:  5'- --cGACGGccugCGCCGCCugGGcuucgccGGCGGCa -3'
miRNA:   3'- cauCUGCCa---GCGGCGGugCU-------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6557 0.79 0.110273
Target:  5'- --cGGCGuGUUGCCGCCgACGA-GCGGCg -3'
miRNA:   3'- cauCUGC-CAGCGGCGG-UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 4411 0.78 0.12767
Target:  5'- -cGGGCGGUCGUCgGCuucuuuucugggcuuCACGggGCGGCu -3'
miRNA:   3'- caUCUGCCAGCGG-CG---------------GUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 11167 0.77 0.140645
Target:  5'- ---uGCGGUCGCgCGCCACGAGcCGGUg -3'
miRNA:   3'- caucUGCCAGCG-GCGGUGCUUcGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48952 0.77 0.144459
Target:  5'- -cAGAUGGUCGCCagcaugacGCCGCaGAugcaGGCGGCg -3'
miRNA:   3'- caUCUGCCAGCGG--------CGGUG-CU----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 46745 0.76 0.160671
Target:  5'- -cGGAuCGaUCGCCGCCACGccggucguacAGGCGGCg -3'
miRNA:   3'- caUCU-GCcAGCGGCGGUGC----------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6480 0.76 0.169379
Target:  5'- -cAGACGGUUGCCGaUCugcuCGAuGCGGCg -3'
miRNA:   3'- caUCUGCCAGCGGC-GGu---GCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 35917 0.75 0.20169
Target:  5'- -aGGGCGGUCuuggcucgGCCGCCuugccgccguccuuGCGAcGCGGCa -3'
miRNA:   3'- caUCUGCCAG--------CGGCGG--------------UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 30514 0.75 0.202732
Target:  5'- -gAGAUGGUCGUCGCCgaccuggGCGAAGCaacgccgaaGGCc -3'
miRNA:   3'- caUCUGCCAGCGGCGG-------UGCUUCG---------CCG- -5'
23942 5' -58.1 NC_005262.1 + 16082 0.74 0.208549
Target:  5'- -cAGGCGGcgagcCGCCGCC-CGgcGCGGUg -3'
miRNA:   3'- caUCUGCCa----GCGGCGGuGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17032 0.74 0.230343
Target:  5'- ---cGCGcGUCGCCGCCuguACGAccggcguGGCGGCg -3'
miRNA:   3'- caucUGC-CAGCGGCGG---UGCU-------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17544 0.73 0.249011
Target:  5'- ---cGCGGUCG-CG-CGCGAGGCGGCa -3'
miRNA:   3'- caucUGCCAGCgGCgGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 4796 0.73 0.255294
Target:  5'- -cAGACGGUCGaagCGCgACGgcGCGGg -3'
miRNA:   3'- caUCUGCCAGCg--GCGgUGCuuCGCCg -5'
23942 5' -58.1 NC_005262.1 + 29582 0.73 0.261707
Target:  5'- ---aGCGuGUCGCCcgaaGCCGCGAucgcgGGCGGCa -3'
miRNA:   3'- caucUGC-CAGCGG----CGGUGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 34129 0.73 0.26825
Target:  5'- uUGGGCGGgcugCGCgGgCGCG-GGCGGCa -3'
miRNA:   3'- cAUCUGCCa---GCGgCgGUGCuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21559 0.73 0.26825
Target:  5'- -cAGAUGc-CGCCGCCugGAaacgagGGCGGCu -3'
miRNA:   3'- caUCUGCcaGCGGCGGugCU------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.