miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 47564 0.72 0.281045
Target:  5'- -aAGGCGa-CGUCGCCcgacgaaGCGAAGCGGCu -3'
miRNA:   3'- caUCUGCcaGCGGCGG-------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 53326 0.72 0.288672
Target:  5'- ----cUGGUCGCCGCUGuCGucGCGGCu -3'
miRNA:   3'- caucuGCCAGCGGCGGU-GCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 22607 0.72 0.295746
Target:  5'- ---aGCGGUCGCCGggcgcgcaCGCGAucGCGGCg -3'
miRNA:   3'- caucUGCCAGCGGCg-------GUGCUu-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47284 0.72 0.295746
Target:  5'- ---aACGGaCGCCGCgGCGAAGauCGGCg -3'
miRNA:   3'- caucUGCCaGCGGCGgUGCUUC--GCCG- -5'
23942 5' -58.1 NC_005262.1 + 10639 0.71 0.325383
Target:  5'- -aGGGCGGguugccgaUCGCCGCguCGAAgaacucgcGCGGCa -3'
miRNA:   3'- caUCUGCC--------AGCGGCGguGCUU--------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14047 0.71 0.349024
Target:  5'- -gGGcGCGGgCGCCGCCGgCGucgguGCGGCu -3'
miRNA:   3'- caUC-UGCCaGCGGCGGU-GCuu---CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 5591 0.71 0.357172
Target:  5'- -cGGGCGG-CGCCGCUcuccgcagGCGAcGCGGa -3'
miRNA:   3'- caUCUGCCaGCGGCGG--------UGCUuCGCCg -5'
23942 5' -58.1 NC_005262.1 + 60378 0.71 0.357172
Target:  5'- cGgcGAaGGUCGCCgGCCGCaaGAucgucGGCGGCa -3'
miRNA:   3'- -CauCUgCCAGCGG-CGGUG--CU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6821 0.7 0.365452
Target:  5'- cGUAGGCGGUCuuGCCGaCCACGcccGCGa- -3'
miRNA:   3'- -CAUCUGCCAG--CGGC-GGUGCuu-CGCcg -5'
23942 5' -58.1 NC_005262.1 + 16361 0.7 0.365452
Target:  5'- --uGAuCGG-CGCCGCCGCGuu-CGGCa -3'
miRNA:   3'- cauCU-GCCaGCGGCGGUGCuucGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7375 0.7 0.368801
Target:  5'- --cGACGGUCggGCCGUCcuugaucuugcagagGCuGAAGCGGCc -3'
miRNA:   3'- cauCUGCCAG--CGGCGG---------------UG-CUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14004 0.7 0.373017
Target:  5'- -cGGACGGUgcaggggCGuCCGgCGCGGcAGCGGCc -3'
miRNA:   3'- caUCUGCCA-------GC-GGCgGUGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 57477 0.7 0.373864
Target:  5'- --cGGCGGgCGCCGaCGaGAGGCGGCc -3'
miRNA:   3'- cauCUGCCaGCGGCgGUgCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 2373 0.7 0.373864
Target:  5'- cGUGGAauuccuCGGcCGCCGCCuucgccucgcgcGCGAggucguaguAGCGGCu -3'
miRNA:   3'- -CAUCU------GCCaGCGGCGG------------UGCU---------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 32534 0.7 0.373864
Target:  5'- -cGGACGG--GCCGCCuuCGG-GCGGCu -3'
miRNA:   3'- caUCUGCCagCGGCGGu-GCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 28714 0.7 0.382406
Target:  5'- --cGACGaGUU-CCGCCGCGAGGCcGCg -3'
miRNA:   3'- cauCUGC-CAGcGGCGGUGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 12425 0.7 0.399876
Target:  5'- -gAGACGGUaGCCGagcCGAuGCGGCg -3'
miRNA:   3'- caUCUGCCAgCGGCgguGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 38524 0.7 0.408799
Target:  5'- -aGGAUcaGGUUGCggUGCCA-GAGGCGGCg -3'
miRNA:   3'- caUCUG--CCAGCG--GCGGUgCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 27957 0.7 0.408799
Target:  5'- cUGGGCGGUCGCggCGCCgACGccGCuccGGCc -3'
miRNA:   3'- cAUCUGCCAGCG--GCGG-UGCuuCG---CCG- -5'
23942 5' -58.1 NC_005262.1 + 535 0.7 0.408799
Target:  5'- -cAGGCGG-CgGCUGCCACGA--UGGCg -3'
miRNA:   3'- caUCUGCCaG-CGGCGGUGCUucGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.