miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 535 0.7 0.408799
Target:  5'- -cAGGCGG-CgGCUGCCACGA--UGGCg -3'
miRNA:   3'- caUCUGCCaG-CGGCGGUGCUucGCCG- -5'
23942 5' -58.1 NC_005262.1 + 10988 0.69 0.41512
Target:  5'- -gGGAacgcCGGUCG-CGCUcgcacggcugacgaGCGAGGCGGCu -3'
miRNA:   3'- caUCU----GCCAGCgGCGG--------------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 42420 0.69 0.417847
Target:  5'- -cAGGCGG-CGCCaGCCggccgcaacaucACGAAGCaGCg -3'
miRNA:   3'- caUCUGCCaGCGG-CGG------------UGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 62422 0.69 0.420584
Target:  5'- -gAGugGGUUccagaaaGCCugugggggcaaucucGCCAcCGAGGCGGCg -3'
miRNA:   3'- caUCugCCAG-------CGG---------------CGGU-GCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 50344 0.69 0.427015
Target:  5'- -aGGACGaagCGcCCGCgACGAccgcgAGCGGCg -3'
miRNA:   3'- caUCUGCca-GC-GGCGgUGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6655 0.69 0.427015
Target:  5'- --cGAuCGcGUCGCCGuccucgauCCACGA-GCGGCg -3'
miRNA:   3'- cauCU-GC-CAGCGGC--------GGUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62669 0.69 0.427015
Target:  5'- -gGGugGGUUuaGuCCGCC-CGGcGGCGGCa -3'
miRNA:   3'- caUCugCCAG--C-GGCGGuGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 8151 0.69 0.427015
Target:  5'- --uGcCGGaCGCgGCCACGAGcgcGCGGCc -3'
miRNA:   3'- cauCuGCCaGCGgCGGUGCUU---CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12529 0.69 0.436301
Target:  5'- --cGACGcGaUCGCCuCCAUGuuGCGGCg -3'
miRNA:   3'- cauCUGC-C-AGCGGcGGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17191 0.69 0.436301
Target:  5'- -cGGGCGGgaucuguggCGuCUGCgGCGAGGaCGGCg -3'
miRNA:   3'- caUCUGCCa--------GC-GGCGgUGCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 49621 0.69 0.436301
Target:  5'- aUGGAgCGGcUUGCCGCacuccuCGgcGCGGCg -3'
miRNA:   3'- cAUCU-GCC-AGCGGCGgu----GCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 35228 0.69 0.436301
Target:  5'- -cGGA-GGUCGgCGgCGCGAucggcAGCGGCu -3'
miRNA:   3'- caUCUgCCAGCgGCgGUGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 57702 0.69 0.436301
Target:  5'- -aGGugcuuuCGGUagGCCGCCACGAcGCGcGCc -3'
miRNA:   3'- caUCu-----GCCAg-CGGCGGUGCUuCGC-CG- -5'
23942 5' -58.1 NC_005262.1 + 60189 0.69 0.440047
Target:  5'- aGUGGGCGGcaaccggcaaggaGCCgGCCgGCGAGGuCGGCa -3'
miRNA:   3'- -CAUCUGCCag-----------CGG-CGG-UGCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 31737 0.69 0.445702
Target:  5'- --cGGCGGUCGCaUGUCGCGcAAGC-GCa -3'
miRNA:   3'- cauCUGCCAGCG-GCGGUGC-UUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 54064 0.69 0.445702
Target:  5'- --cGACGGcaccgUGaCCGUgACGAAGCGGUu -3'
miRNA:   3'- cauCUGCCa----GC-GGCGgUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 30892 0.69 0.445702
Target:  5'- -cGGAUGGUgaCGCCGCUcgcgcuCGAGGaUGGCa -3'
miRNA:   3'- caUCUGCCA--GCGGCGGu-----GCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 52449 0.69 0.445702
Target:  5'- --cGACG--UGCCGCgCGCGA-GCGGCg -3'
miRNA:   3'- cauCUGCcaGCGGCG-GUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 9677 0.69 0.455216
Target:  5'- aGUAGGCGaGggCGCCGUCGacguCGAGGCGcaGCa -3'
miRNA:   3'- -CAUCUGC-Ca-GCGGCGGU----GCUUCGC--CG- -5'
23942 5' -58.1 NC_005262.1 + 37250 0.69 0.455216
Target:  5'- ---aGCGcGUCgGCCGCUuCGGAGUGGCc -3'
miRNA:   3'- caucUGC-CAG-CGGCGGuGCUUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.