Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23942 | 5' | -58.1 | NC_005262.1 | + | 43463 | 0.66 | 0.608278 |
Target: 5'- -cGGAuCGaGUCgaGCCGCUuCGuGGCGGCg -3' miRNA: 3'- caUCU-GC-CAG--CGGCGGuGCuUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 43852 | 0.66 | 0.608278 |
Target: 5'- --cGGCGGUgCGCCGgCAgGAccuCGGCg -3' miRNA: 3'- cauCUGCCA-GCGGCgGUgCUuc-GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 25099 | 0.66 | 0.607216 |
Target: 5'- --cGACGacgCGCCGCuCACGGAGgaugagcUGGCg -3' miRNA: 3'- cauCUGCca-GCGGCG-GUGCUUC-------GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 3614 | 0.66 | 0.597672 |
Target: 5'- --uGcCGGUUGCCGCCcacuggcCGAgcgccuucacGGCGGCc -3' miRNA: 3'- cauCuGCCAGCGGCGGu------GCU----------UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 34592 | 0.66 | 0.597672 |
Target: 5'- ---uGCGG-CGCCGugauCCACGAgaucgAGCGGUg -3' miRNA: 3'- caucUGCCaGCGGC----GGUGCU-----UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 22393 | 0.66 | 0.597672 |
Target: 5'- -gAGGugcCGG-CGCCGaCgAUGAAGCGGUc -3' miRNA: 3'- caUCU---GCCaGCGGC-GgUGCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 10778 | 0.66 | 0.597672 |
Target: 5'- cUGGcUGGUCGCgGCCAUGcuGUcgGGCa -3' miRNA: 3'- cAUCuGCCAGCGgCGGUGCuuCG--CCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 29179 | 0.66 | 0.597672 |
Target: 5'- -cAGGCGGcCGUCGCCgagcugAUGGAGgucauCGGCa -3' miRNA: 3'- caUCUGCCaGCGGCGG------UGCUUC-----GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 48063 | 0.66 | 0.597672 |
Target: 5'- --cGuCGGUCGCaccuGCCGCGAcgAGCcgcccGGCg -3' miRNA: 3'- cauCuGCCAGCGg---CGGUGCU--UCG-----CCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 36523 | 0.66 | 0.597672 |
Target: 5'- cGUuGACGGUCGgCGCgGCGAcugGGauuaucgGGCg -3' miRNA: 3'- -CAuCUGCCAGCgGCGgUGCU---UCg------CCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 30423 | 0.66 | 0.597672 |
Target: 5'- cUGGACGGcgcucgacacguUCGUgaaggagauCGCCGCGAAGcCGGa -3' miRNA: 3'- cAUCUGCC------------AGCG---------GCGGUGCUUC-GCCg -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 13130 | 0.66 | 0.597672 |
Target: 5'- cGUGGcACaauuaGGUcCGCCGCgCGCGcugcGCGGCa -3' miRNA: 3'- -CAUC-UG-----CCA-GCGGCG-GUGCuu--CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 53904 | 0.66 | 0.587094 |
Target: 5'- cGUGGACGGgucugCGCgaCGCgcUGAAGCaGGCg -3' miRNA: 3'- -CAUCUGCCa----GCG--GCGguGCUUCG-CCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 17260 | 0.66 | 0.587094 |
Target: 5'- --cGGCGGcCGgCGCCGCGcuGGGCuGCu -3' miRNA: 3'- cauCUGCCaGCgGCGGUGC--UUCGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 32502 | 0.66 | 0.587094 |
Target: 5'- -cAGACccauuGUCGCCgcgaucuugGCCGCGGAcgacuGCGGCu -3' miRNA: 3'- caUCUGc----CAGCGG---------CGGUGCUU-----CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 62341 | 0.66 | 0.584983 |
Target: 5'- -cGGGCGGcguuugaggcuauUCGaaaCGCUgcgcucgACGAAGCGGCc -3' miRNA: 3'- caUCUGCC-------------AGCg--GCGG-------UGCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 61424 | 0.67 | 0.576551 |
Target: 5'- aGgcGGCGGcCGaggaauuccaCGUCGCGAagaaGGCGGCg -3' miRNA: 3'- -CauCUGCCaGCg---------GCGGUGCU----UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 59468 | 0.67 | 0.576551 |
Target: 5'- aUGGACGGcccgcgaggcUCGCCGUagucgACGAugAGgGGCg -3' miRNA: 3'- cAUCUGCC----------AGCGGCGg----UGCU--UCgCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 10836 | 0.67 | 0.576551 |
Target: 5'- ---uGCGcGUcCGCCGCgcuCAgGggGCGGCa -3' miRNA: 3'- caucUGC-CA-GCGGCG---GUgCuuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 12316 | 0.67 | 0.566051 |
Target: 5'- --cGACGGcaugcggcucgUGCCGCagCGCGcGGCGGCa -3' miRNA: 3'- cauCUGCCa----------GCGGCG--GUGCuUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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