miRNA display CGI


Results 41 - 60 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 12316 0.67 0.566051
Target:  5'- --cGACGGcaugcggcucgUGCCGCagCGCGcGGCGGCa -3'
miRNA:   3'- cauCUGCCa----------GCGGCG--GUGCuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6338 0.67 0.566051
Target:  5'- --cGACcuccaucGUCGCCGCCGCGGcauccGCGGa -3'
miRNA:   3'- cauCUGc------CAGCGGCGGUGCUu----CGCCg -5'
23942 5' -58.1 NC_005262.1 + 8278 0.67 0.563957
Target:  5'- -aGGAagcugcccgCGUCGCuCGCGAGGCGGCc -3'
miRNA:   3'- caUCUgcca-----GCGGCG-GUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 41571 0.67 0.559775
Target:  5'- cGUGGGCGG-CGCgGCCgugagcuugucgagcGCGAGccCGGCg -3'
miRNA:   3'- -CAUCUGCCaGCGgCGG---------------UGCUUc-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 26512 0.67 0.555601
Target:  5'- ---aACGGaUCGCCGCgCACGuugaacGUGGCu -3'
miRNA:   3'- caucUGCC-AGCGGCG-GUGCuu----CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 30158 0.67 0.555601
Target:  5'- --cGGCGGaUGCCGaCGCGAAGCugaaggagaucGGCg -3'
miRNA:   3'- cauCUGCCaGCGGCgGUGCUUCG-----------CCG- -5'
23942 5' -58.1 NC_005262.1 + 27833 0.67 0.555601
Target:  5'- -cGGcCGGUCugacuucaagguGCUGCCGCGucgcaaggacGGCGGCa -3'
miRNA:   3'- caUCuGCCAG------------CGGCGGUGCu---------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21800 0.67 0.555601
Target:  5'- -gAGGCGGgCGuUCGUCGCGuucugcGCGGCg -3'
miRNA:   3'- caUCUGCCaGC-GGCGGUGCuu----CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7860 0.67 0.555601
Target:  5'- --uGACGGcCGCCGCCcuCGAucgccGGaCGGUc -3'
miRNA:   3'- cauCUGCCaGCGGCGGu-GCU-----UC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 52386 0.67 0.555601
Target:  5'- --cGGCGG-C-CCGgCGCGgcGCGGCu -3'
miRNA:   3'- cauCUGCCaGcGGCgGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 24188 0.67 0.555601
Target:  5'- --cGGCGaGUUcaCGCC-CGAGGCGGCa -3'
miRNA:   3'- cauCUGC-CAGcgGCGGuGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62545 0.67 0.555601
Target:  5'- uUGGGCGGUUGUggggaucaCGuCCugGucggAGGCGGCg -3'
miRNA:   3'- cAUCUGCCAGCG--------GC-GGugC----UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 11089 0.67 0.555601
Target:  5'- -aGGGCGGccCGCUGgCACGcuuGGCGGg -3'
miRNA:   3'- caUCUGCCa-GCGGCgGUGCu--UCGCCg -5'
23942 5' -58.1 NC_005262.1 + 187 0.67 0.553518
Target:  5'- -cGGACGGcuucaugguccaCGCCGgCG-GggGCGGCg -3'
miRNA:   3'- caUCUGCCa-----------GCGGCgGUgCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7036 0.67 0.545208
Target:  5'- uGUAG-CGcUCGUCGCC-CGAcgccagcgcGGCGGCc -3'
miRNA:   3'- -CAUCuGCcAGCGGCGGuGCU---------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 51242 0.67 0.545208
Target:  5'- --cGACGaG-CGCCGCCGCGAccuGCcGCc -3'
miRNA:   3'- cauCUGC-CaGCGGCGGUGCUu--CGcCG- -5'
23942 5' -58.1 NC_005262.1 + 37157 0.67 0.545208
Target:  5'- -cAGGCGGUgCGCCaGCUACGcGGGC-GCu -3'
miRNA:   3'- caUCUGCCA-GCGG-CGGUGC-UUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 18592 0.67 0.545208
Target:  5'- --cGGCGGacaUGCCGCCuGCGAGGgcaGGCc -3'
miRNA:   3'- cauCUGCCa--GCGGCGG-UGCUUCg--CCG- -5'
23942 5' -58.1 NC_005262.1 + 31249 0.67 0.545208
Target:  5'- -aGGAaucaGGguugaGCCGCC-CGAAgGCGGCc -3'
miRNA:   3'- caUCUg---CCag---CGGCGGuGCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 51447 0.67 0.53385
Target:  5'- -aAGGCcGUauuccuucaaugcUGCCGCCGCGcgcuGCGGCa -3'
miRNA:   3'- caUCUGcCA-------------GCGGCGGUGCuu--CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.