miRNA display CGI


Results 61 - 80 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 12265 0.67 0.530766
Target:  5'- -gAGcCGGUCGCCGUguugcgCACGGucgucucgccguuGCGGCc -3'
miRNA:   3'- caUCuGCCAGCGGCG------GUGCUu------------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 11901 0.67 0.524619
Target:  5'- ---aGCGGUCGgUGCCGUucGGCGGCg -3'
miRNA:   3'- caucUGCCAGCgGCGGUGcuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47737 0.67 0.524619
Target:  5'- -aGGAUcGUCgGCCGCaaguCGCGGuAGCGGCg -3'
miRNA:   3'- caUCUGcCAG-CGGCG----GUGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14252 0.67 0.524619
Target:  5'- -aGGACGcagCGUCGCCggagACgGAAGUGGCa -3'
miRNA:   3'- caUCUGCca-GCGGCGG----UG-CUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 3266 0.67 0.523597
Target:  5'- ---uGCGGUCGaagucgaCCGUCACGcucuuGGCGGCc -3'
miRNA:   3'- caucUGCCAGC-------GGCGGUGCu----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 5174 0.68 0.514435
Target:  5'- --uGACGGcCGgCGUCGCGGGcGCGGg -3'
miRNA:   3'- cauCUGCCaGCgGCGGUGCUU-CGCCg -5'
23942 5' -58.1 NC_005262.1 + 49710 0.68 0.514435
Target:  5'- --cGACGGcgUGCCggGCgGCGAaccGGCGGCc -3'
miRNA:   3'- cauCUGCCa-GCGG--CGgUGCU---UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 41665 0.68 0.514435
Target:  5'- --cGGCGG-CGCCGUCAuCGccGcCGGCa -3'
miRNA:   3'- cauCUGCCaGCGGCGGU-GCuuC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 48468 0.68 0.513421
Target:  5'- ---cGCGGaUCGCgaGCCGCGugggcacGGGCGGCg -3'
miRNA:   3'- caucUGCC-AGCGg-CGGUGC-------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 38244 0.68 0.504332
Target:  5'- -cAGGCGGUggaucgugcCGCCGCgCACGGAcgucgcgacGCGGa -3'
miRNA:   3'- caUCUGCCA---------GCGGCG-GUGCUU---------CGCCg -5'
23942 5' -58.1 NC_005262.1 + 48487 0.68 0.504332
Target:  5'- --cGACGGcCGcCCGcCCAUGc-GCGGCg -3'
miRNA:   3'- cauCUGCCaGC-GGC-GGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17323 0.68 0.494316
Target:  5'- --cGACGGgcugCGUCGUgGcCGgcGCGGCa -3'
miRNA:   3'- cauCUGCCa---GCGGCGgU-GCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 59686 0.68 0.494316
Target:  5'- uGUGGACGaucggcgUGCCGCCACGcGGGCgcuacgucgccGGCa -3'
miRNA:   3'- -CAUCUGCca-----GCGGCGGUGC-UUCG-----------CCG- -5'
23942 5' -58.1 NC_005262.1 + 47719 0.68 0.494316
Target:  5'- gGgcGGCGGcUCGCCGCCuguaucugguGCGccgccggccGCGGCg -3'
miRNA:   3'- -CauCUGCC-AGCGGCGG----------UGCuu-------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 8828 0.68 0.484393
Target:  5'- aGUGGACGcUCGCCggGCUuuCGAAcGUGGCg -3'
miRNA:   3'- -CAUCUGCcAGCGG--CGGu-GCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 20444 0.68 0.481434
Target:  5'- ---cACGGUuccggcacCGUCGCCGCGugggcuguuccgcaGAGCGGCg -3'
miRNA:   3'- caucUGCCA--------GCGGCGGUGC--------------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 20786 0.68 0.474565
Target:  5'- gGUAG-CGGcCGaagaacuggcCCGaCACGAAGCGGCc -3'
miRNA:   3'- -CAUCuGCCaGC----------GGCgGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 53080 0.68 0.474565
Target:  5'- ---uGCGGgagCGCCgGCCGCGugcgcGCGGCc -3'
miRNA:   3'- caucUGCCa--GCGG-CGGUGCuu---CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 13792 0.68 0.473587
Target:  5'- -cGGugGG-CGCCGgCGCGGcuucaucGGCGGg -3'
miRNA:   3'- caUCugCCaGCGGCgGUGCU-------UCGCCg -5'
23942 5' -58.1 NC_005262.1 + 24324 0.69 0.464838
Target:  5'- --cGAUGGUCGgCGCgAuCGAcauGCGGCu -3'
miRNA:   3'- cauCUGCCAGCgGCGgU-GCUu--CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.