miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 187 0.67 0.553518
Target:  5'- -cGGACGGcuucaugguccaCGCCGgCG-GggGCGGCg -3'
miRNA:   3'- caUCUGCCa-----------GCGGCgGUgCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 535 0.7 0.408799
Target:  5'- -cAGGCGG-CgGCUGCCACGA--UGGCg -3'
miRNA:   3'- caUCUGCCaG-CGGCGGUGCUucGCCG- -5'
23942 5' -58.1 NC_005262.1 + 2373 0.7 0.373864
Target:  5'- cGUGGAauuccuCGGcCGCCGCCuucgccucgcgcGCGAggucguaguAGCGGCu -3'
miRNA:   3'- -CAUCU------GCCaGCGGCGG------------UGCU---------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 3266 0.67 0.523597
Target:  5'- ---uGCGGUCGaagucgaCCGUCACGcucuuGGCGGCc -3'
miRNA:   3'- caucUGCCAGC-------GGCGGUGCu----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 3614 0.66 0.597672
Target:  5'- --uGcCGGUUGCCGCCcacuggcCGAgcgccuucacGGCGGCc -3'
miRNA:   3'- cauCuGCCAGCGGCGGu------GCU----------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 4411 0.78 0.12767
Target:  5'- -cGGGCGGUCGUCgGCuucuuuucugggcuuCACGggGCGGCu -3'
miRNA:   3'- caUCUGCCAGCGG-CG---------------GUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 4796 0.73 0.255294
Target:  5'- -cAGACGGUCGaagCGCgACGgcGCGGg -3'
miRNA:   3'- caUCUGCCAGCg--GCGgUGCuuCGCCg -5'
23942 5' -58.1 NC_005262.1 + 5174 0.68 0.514435
Target:  5'- --uGACGGcCGgCGUCGCGGGcGCGGg -3'
miRNA:   3'- cauCUGCCaGCgGCGGUGCUU-CGCCg -5'
23942 5' -58.1 NC_005262.1 + 5591 0.71 0.357172
Target:  5'- -cGGGCGG-CGCCGCUcuccgcagGCGAcGCGGa -3'
miRNA:   3'- caUCUGCCaGCGGCGG--------UGCUuCGCCg -5'
23942 5' -58.1 NC_005262.1 + 6338 0.67 0.566051
Target:  5'- --cGACcuccaucGUCGCCGCCGCGGcauccGCGGa -3'
miRNA:   3'- cauCUGc------CAGCGGCGGUGCUu----CGCCg -5'
23942 5' -58.1 NC_005262.1 + 6480 0.76 0.169379
Target:  5'- -cAGACGGUUGCCGaUCugcuCGAuGCGGCg -3'
miRNA:   3'- caUCUGCCAGCGGC-GGu---GCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6557 0.79 0.110273
Target:  5'- --cGGCGuGUUGCCGCCgACGA-GCGGCg -3'
miRNA:   3'- cauCUGC-CAGCGGCGG-UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6655 0.69 0.427015
Target:  5'- --cGAuCGcGUCGCCGuccucgauCCACGA-GCGGCg -3'
miRNA:   3'- cauCU-GC-CAGCGGC--------GGUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6821 0.7 0.365452
Target:  5'- cGUAGGCGGUCuuGCCGaCCACGcccGCGa- -3'
miRNA:   3'- -CAUCUGCCAG--CGGC-GGUGCuu-CGCcg -5'
23942 5' -58.1 NC_005262.1 + 7036 0.67 0.545208
Target:  5'- uGUAG-CGcUCGUCGCC-CGAcgccagcgcGGCGGCc -3'
miRNA:   3'- -CAUCuGCcAGCGGCGGuGCU---------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7375 0.7 0.368801
Target:  5'- --cGACGGUCggGCCGUCcuugaucuugcagagGCuGAAGCGGCc -3'
miRNA:   3'- cauCUGCCAG--CGGCGG---------------UG-CUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7860 0.67 0.555601
Target:  5'- --uGACGGcCGCCGCCcuCGAucgccGGaCGGUc -3'
miRNA:   3'- cauCUGCCaGCGGCGGu-GCU-----UC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 8151 0.69 0.427015
Target:  5'- --uGcCGGaCGCgGCCACGAGcgcGCGGCc -3'
miRNA:   3'- cauCuGCCaGCGgCGGUGCUU---CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 8278 0.67 0.563957
Target:  5'- -aGGAagcugcccgCGUCGCuCGCGAGGCGGCc -3'
miRNA:   3'- caUCUgcca-----GCGGCG-GUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 8828 0.68 0.484393
Target:  5'- aGUGGACGcUCGCCggGCUuuCGAAcGUGGCg -3'
miRNA:   3'- -CAUCUGCcAGCGG--CGGu-GCUU-CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.