miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 9677 0.69 0.455216
Target:  5'- aGUAGGCGaGggCGCCGUCGacguCGAGGCGcaGCa -3'
miRNA:   3'- -CAUCUGC-Ca-GCGGCGGU----GCUUCGC--CG- -5'
23942 5' -58.1 NC_005262.1 + 10463 0.8 0.091017
Target:  5'- -cGGGCGGaaGCCGCgACGAcAGCGGCg -3'
miRNA:   3'- caUCUGCCagCGGCGgUGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 10639 0.71 0.325383
Target:  5'- -aGGGCGGguugccgaUCGCCGCguCGAAgaacucgcGCGGCa -3'
miRNA:   3'- caUCUGCC--------AGCGGCGguGCUU--------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 10778 0.66 0.597672
Target:  5'- cUGGcUGGUCGCgGCCAUGcuGUcgGGCa -3'
miRNA:   3'- cAUCuGCCAGCGgCGGUGCuuCG--CCG- -5'
23942 5' -58.1 NC_005262.1 + 10836 0.67 0.576551
Target:  5'- ---uGCGcGUcCGCCGCgcuCAgGggGCGGCa -3'
miRNA:   3'- caucUGC-CA-GCGGCG---GUgCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 10988 0.69 0.41512
Target:  5'- -gGGAacgcCGGUCG-CGCUcgcacggcugacgaGCGAGGCGGCu -3'
miRNA:   3'- caUCU----GCCAGCgGCGG--------------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 11089 0.67 0.555601
Target:  5'- -aGGGCGGccCGCUGgCACGcuuGGCGGg -3'
miRNA:   3'- caUCUGCCa-GCGGCgGUGCu--UCGCCg -5'
23942 5' -58.1 NC_005262.1 + 11167 0.77 0.140645
Target:  5'- ---uGCGGUCGCgCGCCACGAGcCGGUg -3'
miRNA:   3'- caucUGCCAGCG-GCGGUGCUUcGCCG- -5'
23942 5' -58.1 NC_005262.1 + 11901 0.67 0.524619
Target:  5'- ---aGCGGUCGgUGCCGUucGGCGGCg -3'
miRNA:   3'- caucUGCCAGCgGCGGUGcuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12265 0.67 0.530766
Target:  5'- -gAGcCGGUCGCCGUguugcgCACGGucgucucgccguuGCGGCc -3'
miRNA:   3'- caUCuGCCAGCGGCG------GUGCUu------------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12316 0.67 0.566051
Target:  5'- --cGACGGcaugcggcucgUGCCGCagCGCGcGGCGGCa -3'
miRNA:   3'- cauCUGCCa----------GCGGCG--GUGCuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12425 0.7 0.399876
Target:  5'- -gAGACGGUaGCCGagcCGAuGCGGCg -3'
miRNA:   3'- caUCUGCCAgCGGCgguGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12529 0.69 0.436301
Target:  5'- --cGACGcGaUCGCCuCCAUGuuGCGGCg -3'
miRNA:   3'- cauCUGC-C-AGCGGcGGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12614 0.66 0.629538
Target:  5'- ---aGCGG--GCCGCCGCGucGuCGGCu -3'
miRNA:   3'- caucUGCCagCGGCGGUGCuuC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 13130 0.66 0.597672
Target:  5'- cGUGGcACaauuaGGUcCGCCGCgCGCGcugcGCGGCa -3'
miRNA:   3'- -CAUC-UG-----CCA-GCGGCG-GUGCuu--CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 13150 0.66 0.629538
Target:  5'- cUGGAgcCGGUUGCUGCUc---GGCGGCg -3'
miRNA:   3'- cAUCU--GCCAGCGGCGGugcuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 13792 0.68 0.473587
Target:  5'- -cGGugGG-CGCCGgCGCGGcuucaucGGCGGg -3'
miRNA:   3'- caUCugCCaGCGGCgGUGCU-------UCGCCg -5'
23942 5' -58.1 NC_005262.1 + 14004 0.7 0.373017
Target:  5'- -cGGACGGUgcaggggCGuCCGgCGCGGcAGCGGCc -3'
miRNA:   3'- caUCUGCCA-------GC-GGCgGUGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14047 0.71 0.349024
Target:  5'- -gGGcGCGGgCGCCGCCGgCGucgguGCGGCu -3'
miRNA:   3'- caUC-UGCCaGCGGCGGU-GCuu---CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14252 0.67 0.524619
Target:  5'- -aGGACGcagCGUCGCCggagACgGAAGUGGCa -3'
miRNA:   3'- caUCUGCca-GCGGCGG----UG-CUUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.