miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 14304 0.7 0.408799
Target:  5'- cGUGGACGGgagggCGgcggaaCCGCCgaGCuGGGCGGCg -3'
miRNA:   3'- -CAUCUGCCa----GC------GGCGG--UGcUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14436 0.66 0.629538
Target:  5'- ---cGCGcGUCGCCGagucgucaGCGAGcGCGGCg -3'
miRNA:   3'- caucUGC-CAGCGGCgg------UGCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16026 0.66 0.618902
Target:  5'- -gAGcACGGggagcccgCGCgaugccggguuCGCCGCGGccGGCGGCg -3'
miRNA:   3'- caUC-UGCCa-------GCG-----------GCGGUGCU--UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16082 0.74 0.208549
Target:  5'- -cAGGCGGcgagcCGCCGCC-CGgcGCGGUg -3'
miRNA:   3'- caUCUGCCa----GCGGCGGuGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16361 0.7 0.365452
Target:  5'- --uGAuCGG-CGCCGCCGCGuu-CGGCa -3'
miRNA:   3'- cauCU-GCCaGCGGCGGUGCuucGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16404 0.66 0.618902
Target:  5'- -cGGcCGGcCGCCgggauucugcGCCGCGAGGC-GCa -3'
miRNA:   3'- caUCuGCCaGCGG----------CGGUGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 17032 0.74 0.230343
Target:  5'- ---cGCGcGUCGCCGCCuguACGAccggcguGGCGGCg -3'
miRNA:   3'- caucUGC-CAGCGGCGG---UGCU-------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17191 0.69 0.436301
Target:  5'- -cGGGCGGgaucuguggCGuCUGCgGCGAGGaCGGCg -3'
miRNA:   3'- caUCUGCCa--------GC-GGCGgUGCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 17260 0.66 0.587094
Target:  5'- --cGGCGGcCGgCGCCGCGcuGGGCuGCu -3'
miRNA:   3'- cauCUGCCaGCgGCGGUGC--UUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 17323 0.68 0.494316
Target:  5'- --cGACGGgcugCGUCGUgGcCGgcGCGGCa -3'
miRNA:   3'- cauCUGCCa---GCGGCGgU-GCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17544 0.73 0.249011
Target:  5'- ---cGCGGUCG-CG-CGCGAGGCGGCa -3'
miRNA:   3'- caucUGCCAGCgGCgGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 18592 0.67 0.545208
Target:  5'- --cGGCGGacaUGCCGCCuGCGAGGgcaGGCc -3'
miRNA:   3'- cauCUGCCa--GCGGCGG-UGCUUCg--CCG- -5'
23942 5' -58.1 NC_005262.1 + 19390 0.66 0.644429
Target:  5'- cUGGAUGGaUGCCGCCcagaggcuggAUGAAugugcccccgcagucGCGGCa -3'
miRNA:   3'- cAUCUGCCaGCGGCGG----------UGCUU---------------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 20318 1.11 0.000494
Target:  5'- cGUAGACGGUCGCCGCCACGAAGCGGCu -3'
miRNA:   3'- -CAUCUGCCAGCGGCGGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 20444 0.68 0.481434
Target:  5'- ---cACGGUuccggcacCGUCGCCGCGugggcuguuccgcaGAGCGGCg -3'
miRNA:   3'- caucUGCCA--------GCGGCGGUGC--------------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 20786 0.68 0.474565
Target:  5'- gGUAG-CGGcCGaagaacuggcCCGaCACGAAGCGGCc -3'
miRNA:   3'- -CAUCuGCCaGC----------GGCgGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21183 0.8 0.093559
Target:  5'- --cGACGaUCGCCGCaugACGGAGCGGCa -3'
miRNA:   3'- cauCUGCcAGCGGCGg--UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21559 0.73 0.26825
Target:  5'- -cAGAUGc-CGCCGCCugGAaacgagGGCGGCu -3'
miRNA:   3'- caUCUGCcaGCGGCGGugCU------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21800 0.67 0.555601
Target:  5'- -gAGGCGGgCGuUCGUCGCGuucugcGCGGCg -3'
miRNA:   3'- caUCUGCCaGC-GGCGGUGCuu----CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 22393 0.66 0.597672
Target:  5'- -gAGGugcCGG-CGCCGaCgAUGAAGCGGUc -3'
miRNA:   3'- caUCU---GCCaGCGGC-GgUGCUUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.