miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 63683 0.69 0.464838
Target:  5'- -gAGGuCGGUCGCCgGCCggugacaugcGCaGAAGCGuGCg -3'
miRNA:   3'- caUCU-GCCAGCGG-CGG----------UG-CUUCGC-CG- -5'
23942 5' -58.1 NC_005262.1 + 62669 0.69 0.427015
Target:  5'- -gGGugGGUUuaGuCCGCC-CGGcGGCGGCa -3'
miRNA:   3'- caUCugCCAG--C-GGCGGuGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62545 0.67 0.555601
Target:  5'- uUGGGCGGUUGUggggaucaCGuCCugGucggAGGCGGCg -3'
miRNA:   3'- cAUCUGCCAGCG--------GC-GGugC----UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62422 0.69 0.420584
Target:  5'- -gAGugGGUUccagaaaGCCugugggggcaaucucGCCAcCGAGGCGGCg -3'
miRNA:   3'- caUCugCCAG-------CGG---------------CGGU-GCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62341 0.66 0.584983
Target:  5'- -cGGGCGGcguuugaggcuauUCGaaaCGCUgcgcucgACGAAGCGGCc -3'
miRNA:   3'- caUCUGCC-------------AGCg--GCGG-------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 61424 0.67 0.576551
Target:  5'- aGgcGGCGGcCGaggaauuccaCGUCGCGAagaaGGCGGCg -3'
miRNA:   3'- -CauCUGCCaGCg---------GCGGUGCU----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 60378 0.71 0.357172
Target:  5'- cGgcGAaGGUCGCCgGCCGCaaGAucgucGGCGGCa -3'
miRNA:   3'- -CauCUgCCAGCGG-CGGUG--CU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 60351 0.66 0.623156
Target:  5'- -cGGGCGGUUcgagcugauccccgaGCgCGCUgaaGCGAuGCGGCu -3'
miRNA:   3'- caUCUGCCAG---------------CG-GCGG---UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 60189 0.69 0.440047
Target:  5'- aGUGGGCGGcaaccggcaaggaGCCgGCCgGCGAGGuCGGCa -3'
miRNA:   3'- -CAUCUGCCag-----------CGG-CGG-UGCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 59686 0.68 0.494316
Target:  5'- uGUGGACGaucggcgUGCCGCCACGcGGGCgcuacgucgccGGCa -3'
miRNA:   3'- -CAUCUGCca-----GCGGCGGUGC-UUCG-----------CCG- -5'
23942 5' -58.1 NC_005262.1 + 59468 0.67 0.576551
Target:  5'- aUGGACGGcccgcgaggcUCGCCGUagucgACGAugAGgGGCg -3'
miRNA:   3'- cAUCUGCC----------AGCGGCGg----UGCU--UCgCCG- -5'
23942 5' -58.1 NC_005262.1 + 57702 0.69 0.436301
Target:  5'- -aGGugcuuuCGGUagGCCGCCACGAcGCGcGCc -3'
miRNA:   3'- caUCu-----GCCAg-CGGCGGUGCUuCGC-CG- -5'
23942 5' -58.1 NC_005262.1 + 57477 0.7 0.373864
Target:  5'- --cGGCGGgCGCCGaCGaGAGGCGGCc -3'
miRNA:   3'- cauCUGCCaGCGGCgGUgCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 57422 0.66 0.615713
Target:  5'- -aAGGCGGcCGacaacgcuccggcaCCGuCCGCGGAugccGCGGCg -3'
miRNA:   3'- caUCUGCCaGC--------------GGC-GGUGCUU----CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 57116 0.66 0.640175
Target:  5'- --cGACGGgcuccaguucCGCCGCUcguggauCGAGGaCGGCg -3'
miRNA:   3'- cauCUGCCa---------GCGGCGGu------GCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 54064 0.69 0.445702
Target:  5'- --cGACGGcaccgUGaCCGUgACGAAGCGGUu -3'
miRNA:   3'- cauCUGCCa----GC-GGCGgUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 53904 0.66 0.587094
Target:  5'- cGUGGACGGgucugCGCgaCGCgcUGAAGCaGGCg -3'
miRNA:   3'- -CAUCUGCCa----GCG--GCGguGCUUCG-CCG- -5'
23942 5' -58.1 NC_005262.1 + 53326 0.72 0.288672
Target:  5'- ----cUGGUCGCCGCUGuCGucGCGGCu -3'
miRNA:   3'- caucuGCCAGCGGCGGU-GCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 53080 0.68 0.474565
Target:  5'- ---uGCGGgagCGCCgGCCGCGugcgcGCGGCc -3'
miRNA:   3'- caucUGCCa--GCGG-CGGUGCuu---CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 52934 0.79 0.107012
Target:  5'- --cGACGGccugCGCCGCCugGGcuucgccGGCGGCa -3'
miRNA:   3'- cauCUGCCa---GCGGCGGugCU-------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.