miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 52449 0.69 0.445702
Target:  5'- --cGACG--UGCCGCgCGCGA-GCGGCg -3'
miRNA:   3'- cauCUGCcaGCGGCG-GUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 52386 0.67 0.555601
Target:  5'- --cGGCGG-C-CCGgCGCGgcGCGGCu -3'
miRNA:   3'- cauCUGCCaGcGGCgGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 51447 0.67 0.53385
Target:  5'- -aAGGCcGUauuccuucaaugcUGCCGCCGCGcgcuGCGGCa -3'
miRNA:   3'- caUCUGcCA-------------GCGGCGGUGCuu--CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 51242 0.67 0.545208
Target:  5'- --cGACGaG-CGCCGCCGCGAccuGCcGCc -3'
miRNA:   3'- cauCUGC-CaGCGGCGGUGCUu--CGcCG- -5'
23942 5' -58.1 NC_005262.1 + 50344 0.69 0.427015
Target:  5'- -aGGACGaagCGcCCGCgACGAccgcgAGCGGCg -3'
miRNA:   3'- caUCUGCca-GC-GGCGgUGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 49710 0.68 0.514435
Target:  5'- --cGACGGcgUGCCggGCgGCGAaccGGCGGCc -3'
miRNA:   3'- cauCUGCCa-GCGG--CGgUGCU---UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 49621 0.69 0.436301
Target:  5'- aUGGAgCGGcUUGCCGCacuccuCGgcGCGGCg -3'
miRNA:   3'- cAUCU-GCC-AGCGGCGgu----GCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48952 0.77 0.144459
Target:  5'- -cAGAUGGUCGCCagcaugacGCCGCaGAugcaGGCGGCg -3'
miRNA:   3'- caUCUGCCAGCGG--------CGGUG-CU----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48834 0.66 0.629538
Target:  5'- -aAGGgGGuUCGCCGUCuuuucCGAAGgGGUu -3'
miRNA:   3'- caUCUgCC-AGCGGCGGu----GCUUCgCCG- -5'
23942 5' -58.1 NC_005262.1 + 48487 0.68 0.504332
Target:  5'- --cGACGGcCGcCCGcCCAUGc-GCGGCg -3'
miRNA:   3'- cauCUGCCaGC-GGC-GGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48468 0.68 0.513421
Target:  5'- ---cGCGGaUCGCgaGCCGCGugggcacGGGCGGCg -3'
miRNA:   3'- caucUGCC-AGCGg-CGGUGC-------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48063 0.66 0.597672
Target:  5'- --cGuCGGUCGCaccuGCCGCGAcgAGCcgcccGGCg -3'
miRNA:   3'- cauCuGCCAGCGg---CGGUGCU--UCG-----CCG- -5'
23942 5' -58.1 NC_005262.1 + 47737 0.67 0.524619
Target:  5'- -aGGAUcGUCgGCCGCaaguCGCGGuAGCGGCg -3'
miRNA:   3'- caUCUGcCAG-CGGCG----GUGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47719 0.68 0.494316
Target:  5'- gGgcGGCGGcUCGCCGCCuguaucugguGCGccgccggccGCGGCg -3'
miRNA:   3'- -CauCUGCC-AGCGGCGG----------UGCuu-------CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47564 0.72 0.281045
Target:  5'- -aAGGCGa-CGUCGCCcgacgaaGCGAAGCGGCu -3'
miRNA:   3'- caUCUGCcaGCGGCGG-------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47502 0.79 0.104412
Target:  5'- --cGAuCGGUUGCaCGCCGCGA-GCGGCg -3'
miRNA:   3'- cauCU-GCCAGCG-GCGGUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47284 0.72 0.295746
Target:  5'- ---aACGGaCGCCGCgGCGAAGauCGGCg -3'
miRNA:   3'- caucUGCCaGCGGCGgUGCUUC--GCCG- -5'
23942 5' -58.1 NC_005262.1 + 46745 0.76 0.160671
Target:  5'- -cGGAuCGaUCGCCGCCACGccggucguacAGGCGGCg -3'
miRNA:   3'- caUCU-GCcAGCGGCGGUGC----------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 45896 0.66 0.618902
Target:  5'- --cGGCGGcUCGCCGaaAUcGGGCGGUg -3'
miRNA:   3'- cauCUGCC-AGCGGCggUGcUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 43852 0.66 0.608278
Target:  5'- --cGGCGGUgCGCCGgCAgGAccuCGGCg -3'
miRNA:   3'- cauCUGCCA-GCGGCgGUgCUuc-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.