miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 42420 0.69 0.417847
Target:  5'- -cAGGCGG-CGCCaGCCggccgcaacaucACGAAGCaGCg -3'
miRNA:   3'- caUCUGCCaGCGG-CGG------------UGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 60378 0.71 0.357172
Target:  5'- cGgcGAaGGUCGCCgGCCGCaaGAucgucGGCGGCa -3'
miRNA:   3'- -CauCUgCCAGCGG-CGGUG--CU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16361 0.7 0.365452
Target:  5'- --uGAuCGG-CGCCGCCGCGuu-CGGCa -3'
miRNA:   3'- cauCU-GCCaGCGGCGGUGCuucGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7375 0.7 0.368801
Target:  5'- --cGACGGUCggGCCGUCcuugaucuugcagagGCuGAAGCGGCc -3'
miRNA:   3'- cauCUGCCAG--CGGCGG---------------UG-CUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 32534 0.7 0.373864
Target:  5'- -cGGACGG--GCCGCCuuCGG-GCGGCu -3'
miRNA:   3'- caUCUGCCagCGGCGGu-GCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 28714 0.7 0.382406
Target:  5'- --cGACGaGUU-CCGCCGCGAGGCcGCg -3'
miRNA:   3'- cauCUGC-CAGcGGCGGUGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 12425 0.7 0.399876
Target:  5'- -gAGACGGUaGCCGagcCGAuGCGGCg -3'
miRNA:   3'- caUCUGCCAgCGGCgguGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14304 0.7 0.408799
Target:  5'- cGUGGACGGgagggCGgcggaaCCGCCgaGCuGGGCGGCg -3'
miRNA:   3'- -CAUCUGCCa----GC------GGCGG--UGcUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 10988 0.69 0.41512
Target:  5'- -gGGAacgcCGGUCG-CGCUcgcacggcugacgaGCGAGGCGGCu -3'
miRNA:   3'- caUCU----GCCAGCgGCGG--------------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 47284 0.72 0.295746
Target:  5'- ---aACGGaCGCCGCgGCGAAGauCGGCg -3'
miRNA:   3'- caucUGCCaGCGGCGgUGCUUC--GCCG- -5'
23942 5' -58.1 NC_005262.1 + 47564 0.72 0.281045
Target:  5'- -aAGGCGa-CGUCGCCcgacgaaGCGAAGCGGCu -3'
miRNA:   3'- caUCUGCcaGCGGCGG-------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21559 0.73 0.26825
Target:  5'- -cAGAUGc-CGCCGCCugGAaacgagGGCGGCu -3'
miRNA:   3'- caUCUGCcaGCGGCGGugCU------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21183 0.8 0.093559
Target:  5'- --cGACGaUCGCCGCaugACGGAGCGGCa -3'
miRNA:   3'- cauCUGCcAGCGGCGg--UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 52934 0.79 0.107012
Target:  5'- --cGACGGccugCGCCGCCugGGcuucgccGGCGGCa -3'
miRNA:   3'- cauCUGCCa---GCGGCGGugCU-------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6557 0.79 0.110273
Target:  5'- --cGGCGuGUUGCCGCCgACGA-GCGGCg -3'
miRNA:   3'- cauCUGC-CAGCGGCGG-UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 4411 0.78 0.12767
Target:  5'- -cGGGCGGUCGUCgGCuucuuuucugggcuuCACGggGCGGCu -3'
miRNA:   3'- caUCUGCCAGCGG-CG---------------GUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48952 0.77 0.144459
Target:  5'- -cAGAUGGUCGCCagcaugacGCCGCaGAugcaGGCGGCg -3'
miRNA:   3'- caUCUGCCAGCGG--------CGGUG-CU----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 46745 0.76 0.160671
Target:  5'- -cGGAuCGaUCGCCGCCACGccggucguacAGGCGGCg -3'
miRNA:   3'- caUCU-GCcAGCGGCGGUGC----------UUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 30514 0.75 0.202732
Target:  5'- -gAGAUGGUCGUCGCCgaccuggGCGAAGCaacgccgaaGGCc -3'
miRNA:   3'- caUCUGCCAGCGGCGG-------UGCUUCG---------CCG- -5'
23942 5' -58.1 NC_005262.1 + 17544 0.73 0.249011
Target:  5'- ---cGCGGUCG-CG-CGCGAGGCGGCa -3'
miRNA:   3'- caucUGCCAGCgGCgGUGCUUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.