miRNA display CGI


Results 41 - 60 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 48952 0.77 0.144459
Target:  5'- -cAGAUGGUCGCCagcaugacGCCGCaGAugcaGGCGGCg -3'
miRNA:   3'- caUCUGCCAGCGG--------CGGUG-CU----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 4411 0.78 0.12767
Target:  5'- -cGGGCGGUCGUCgGCuucuuuucugggcuuCACGggGCGGCu -3'
miRNA:   3'- caUCUGCCAGCGG-CG---------------GUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6557 0.79 0.110273
Target:  5'- --cGGCGuGUUGCCGCCgACGA-GCGGCg -3'
miRNA:   3'- cauCUGC-CAGCGGCGG-UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 52934 0.79 0.107012
Target:  5'- --cGACGGccugCGCCGCCugGGcuucgccGGCGGCa -3'
miRNA:   3'- cauCUGCCa---GCGGCGGugCU-------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 21183 0.8 0.093559
Target:  5'- --cGACGaUCGCCGCaugACGGAGCGGCa -3'
miRNA:   3'- cauCUGCcAGCGGCGg--UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 7375 0.7 0.368801
Target:  5'- --cGACGGUCggGCCGUCcuugaucuugcagagGCuGAAGCGGCc -3'
miRNA:   3'- cauCUGCCAG--CGGCGG---------------UG-CUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 32534 0.7 0.373864
Target:  5'- -cGGACGG--GCCGCCuuCGG-GCGGCu -3'
miRNA:   3'- caUCUGCCagCGGCGGu-GCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 30892 0.69 0.445702
Target:  5'- -cGGAUGGUgaCGCCGCUcgcgcuCGAGGaUGGCa -3'
miRNA:   3'- caUCUGCCA--GCGGCGGu-----GCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 60189 0.69 0.440047
Target:  5'- aGUGGGCGGcaaccggcaaggaGCCgGCCgGCGAGGuCGGCa -3'
miRNA:   3'- -CAUCUGCCag-----------CGG-CGG-UGCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 35228 0.69 0.436301
Target:  5'- -cGGA-GGUCGgCGgCGCGAucggcAGCGGCu -3'
miRNA:   3'- caUCUgCCAGCgGCgGUGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 57702 0.69 0.436301
Target:  5'- -aGGugcuuuCGGUagGCCGCCACGAcGCGcGCc -3'
miRNA:   3'- caUCu-----GCCAg-CGGCGGUGCUuCGC-CG- -5'
23942 5' -58.1 NC_005262.1 + 12529 0.69 0.436301
Target:  5'- --cGACGcGaUCGCCuCCAUGuuGCGGCg -3'
miRNA:   3'- cauCUGC-C-AGCGGcGGUGCuuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62669 0.69 0.427015
Target:  5'- -gGGugGGUUuaGuCCGCC-CGGcGGCGGCa -3'
miRNA:   3'- caUCugCCAG--C-GGCGGuGCU-UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 50344 0.69 0.427015
Target:  5'- -aGGACGaagCGcCCGCgACGAccgcgAGCGGCg -3'
miRNA:   3'- caUCUGCca-GC-GGCGgUGCU-----UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 6655 0.69 0.427015
Target:  5'- --cGAuCGcGUCGCCGuccucgauCCACGA-GCGGCg -3'
miRNA:   3'- cauCU-GC-CAGCGGC--------GGUGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 42420 0.69 0.417847
Target:  5'- -cAGGCGG-CGCCaGCCggccgcaacaucACGAAGCaGCg -3'
miRNA:   3'- caUCUGCCaGCGG-CGG------------UGCUUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 10988 0.69 0.41512
Target:  5'- -gGGAacgcCGGUCG-CGCUcgcacggcugacgaGCGAGGCGGCu -3'
miRNA:   3'- caUCU----GCCAGCgGCGG--------------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14304 0.7 0.408799
Target:  5'- cGUGGACGGgagggCGgcggaaCCGCCgaGCuGGGCGGCg -3'
miRNA:   3'- -CAUCUGCCa----GC------GGCGG--UGcUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 12425 0.7 0.399876
Target:  5'- -gAGACGGUaGCCGagcCGAuGCGGCg -3'
miRNA:   3'- caUCUGCCAgCGGCgguGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 28714 0.7 0.382406
Target:  5'- --cGACGaGUU-CCGCCGCGAGGCcGCg -3'
miRNA:   3'- cauCUGC-CAGcGGCGGUGCUUCGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.