miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23942 5' -58.1 NC_005262.1 + 57116 0.66 0.640175
Target:  5'- --cGACGGgcuccaguucCGCCGCUcguggauCGAGGaCGGCg -3'
miRNA:   3'- cauCUGCCa---------GCGGCGGu------GCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 59468 0.67 0.576551
Target:  5'- aUGGACGGcccgcgaggcUCGCCGUagucgACGAugAGgGGCg -3'
miRNA:   3'- cAUCUGCC----------AGCGGCGg----UGCU--UCgCCG- -5'
23942 5' -58.1 NC_005262.1 + 6338 0.67 0.566051
Target:  5'- --cGACcuccaucGUCGCCGCCGCGGcauccGCGGa -3'
miRNA:   3'- cauCUGc------CAGCGGCGGUGCUu----CGCCg -5'
23942 5' -58.1 NC_005262.1 + 20318 1.11 0.000494
Target:  5'- cGUAGACGGUCGCCGCCACGAAGCGGCu -3'
miRNA:   3'- -CAUCUGCCAGCGGCGGUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 13150 0.66 0.629538
Target:  5'- cUGGAgcCGGUUGCUGCUc---GGCGGCg -3'
miRNA:   3'- cAUCU--GCCAGCGGCGGugcuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 60351 0.66 0.623156
Target:  5'- -cGGGCGGUUcgagcugauccccgaGCgCGCUgaaGCGAuGCGGCu -3'
miRNA:   3'- caUCUGCCAG---------------CG-GCGG---UGCUuCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 16026 0.66 0.618902
Target:  5'- -gAGcACGGggagcccgCGCgaugccggguuCGCCGCGGccGGCGGCg -3'
miRNA:   3'- caUC-UGCCa-------GCG-----------GCGGUGCU--UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 31095 0.66 0.618902
Target:  5'- --cGAUGauGUCGCCcaCCugGAGGcCGGCg -3'
miRNA:   3'- cauCUGC--CAGCGGc-GGugCUUC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 22393 0.66 0.597672
Target:  5'- -gAGGugcCGG-CGCCGaCgAUGAAGCGGUc -3'
miRNA:   3'- caUCU---GCCaGCGGC-GgUGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 62341 0.66 0.584983
Target:  5'- -cGGGCGGcguuugaggcuauUCGaaaCGCUgcgcucgACGAAGCGGCc -3'
miRNA:   3'- caUCUGCC-------------AGCg--GCGG-------UGCUUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 3614 0.66 0.597672
Target:  5'- --uGcCGGUUGCCGCCcacuggcCGAgcgccuucacGGCGGCc -3'
miRNA:   3'- cauCuGCCAGCGGCGGu------GCU----------UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 40113 0.66 0.608278
Target:  5'- gGUAGACccacacgCGCCGCU-CG-GGCGGCa -3'
miRNA:   3'- -CAUCUGcca----GCGGCGGuGCuUCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 14436 0.66 0.629538
Target:  5'- ---cGCGcGUCGCCGagucgucaGCGAGcGCGGCg -3'
miRNA:   3'- caucUGC-CAGCGGCgg------UGCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 17260 0.66 0.587094
Target:  5'- --cGGCGGcCGgCGCCGCGcuGGGCuGCu -3'
miRNA:   3'- cauCUGCCaGCgGCGGUGC--UUCGcCG- -5'
23942 5' -58.1 NC_005262.1 + 12614 0.66 0.629538
Target:  5'- ---aGCGG--GCCGCCGCGucGuCGGCu -3'
miRNA:   3'- caucUGCCagCGGCGGUGCuuC-GCCG- -5'
23942 5' -58.1 NC_005262.1 + 23378 0.66 0.612526
Target:  5'- -cAGAUuuucaGGUCGCCGaCgcgcggcugaauccgCGCGAAcGCGGCa -3'
miRNA:   3'- caUCUG-----CCAGCGGC-G---------------GUGCUU-CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 32502 0.66 0.587094
Target:  5'- -cAGACccauuGUCGCCgcgaucuugGCCGCGGAcgacuGCGGCu -3'
miRNA:   3'- caUCUGc----CAGCGG---------CGGUGCUU-----CGCCG- -5'
23942 5' -58.1 NC_005262.1 + 28620 0.67 0.566051
Target:  5'- --cGGCGGUCgugaccucauuGCCGCCAgcgucgccCGGaucGGCGGUa -3'
miRNA:   3'- cauCUGCCAG-----------CGGCGGU--------GCU---UCGCCG- -5'
23942 5' -58.1 NC_005262.1 + 48834 0.66 0.629538
Target:  5'- -aAGGgGGuUCGCCGUCuuuucCGAAGgGGUu -3'
miRNA:   3'- caUCUgCC-AGCGGCGGu----GCUUCgCCG- -5'
23942 5' -58.1 NC_005262.1 + 45896 0.66 0.618902
Target:  5'- --cGGCGGcUCGCCGaaAUcGGGCGGUg -3'
miRNA:   3'- cauCUGCC-AGCGGCggUGcUUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.