Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23942 | 5' | -58.1 | NC_005262.1 | + | 26512 | 0.67 | 0.555601 |
Target: 5'- ---aACGGaUCGCCGCgCACGuugaacGUGGCu -3' miRNA: 3'- caucUGCC-AGCGGCG-GUGCuu----CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 6338 | 0.67 | 0.566051 |
Target: 5'- --cGACcuccaucGUCGCCGCCGCGGcauccGCGGa -3' miRNA: 3'- cauCUGc------CAGCGGCGGUGCUu----CGCCg -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 40113 | 0.66 | 0.608278 |
Target: 5'- gGUAGACccacacgCGCCGCU-CG-GGCGGCa -3' miRNA: 3'- -CAUCUGcca----GCGGCGGuGCuUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 48834 | 0.66 | 0.629538 |
Target: 5'- -aAGGgGGuUCGCCGUCuuuucCGAAGgGGUu -3' miRNA: 3'- caUCUgCC-AGCGGCGGu----GCUUCgCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 11901 | 0.67 | 0.524619 |
Target: 5'- ---aGCGGUCGgUGCCGUucGGCGGCg -3' miRNA: 3'- caucUGCCAGCgGCGGUGcuUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 37157 | 0.67 | 0.545208 |
Target: 5'- -cAGGCGGUgCGCCaGCUACGcGGGC-GCu -3' miRNA: 3'- caUCUGCCA-GCGG-CGGUGC-UUCGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 59468 | 0.67 | 0.576551 |
Target: 5'- aUGGACGGcccgcgaggcUCGCCGUagucgACGAugAGgGGCg -3' miRNA: 3'- cAUCUGCC----------AGCGGCGg----UGCU--UCgCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 12614 | 0.66 | 0.629538 |
Target: 5'- ---aGCGG--GCCGCCGCGucGuCGGCu -3' miRNA: 3'- caucUGCCagCGGCGGUGCuuC-GCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 51242 | 0.67 | 0.545208 |
Target: 5'- --cGACGaG-CGCCGCCGCGAccuGCcGCc -3' miRNA: 3'- cauCUGC-CaGCGGCGGUGCUu--CGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 14436 | 0.66 | 0.629538 |
Target: 5'- ---cGCGcGUCGCCGagucgucaGCGAGcGCGGCg -3' miRNA: 3'- caucUGC-CAGCGGCgg------UGCUU-CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 28620 | 0.67 | 0.566051 |
Target: 5'- --cGGCGGUCgugaccucauuGCCGCCAgcgucgccCGGaucGGCGGUa -3' miRNA: 3'- cauCUGCCAG-----------CGGCGGU--------GCU---UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 21800 | 0.67 | 0.555601 |
Target: 5'- -gAGGCGGgCGuUCGUCGCGuucugcGCGGCg -3' miRNA: 3'- caUCUGCCaGC-GGCGGUGCuu----CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 17260 | 0.66 | 0.587094 |
Target: 5'- --cGGCGGcCGgCGCCGCGcuGGGCuGCu -3' miRNA: 3'- cauCUGCCaGCgGCGGUGC--UUCGcCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 22393 | 0.66 | 0.597672 |
Target: 5'- -gAGGugcCGG-CGCCGaCgAUGAAGCGGUc -3' miRNA: 3'- caUCU---GCCaGCGGC-GgUGCUUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 16026 | 0.66 | 0.618902 |
Target: 5'- -gAGcACGGggagcccgCGCgaugccggguuCGCCGCGGccGGCGGCg -3' miRNA: 3'- caUC-UGCCa-------GCG-----------GCGGUGCU--UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 13150 | 0.66 | 0.629538 |
Target: 5'- cUGGAgcCGGUUGCUGCUc---GGCGGCg -3' miRNA: 3'- cAUCU--GCCAGCGGCGGugcuUCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 17323 | 0.68 | 0.494316 |
Target: 5'- --cGACGGgcugCGUCGUgGcCGgcGCGGCa -3' miRNA: 3'- cauCUGCCa---GCGGCGgU-GCuuCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 3266 | 0.67 | 0.523597 |
Target: 5'- ---uGCGGUCGaagucgaCCGUCACGcucuuGGCGGCc -3' miRNA: 3'- caucUGCCAGC-------GGCGGUGCu----UCGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 51447 | 0.67 | 0.53385 |
Target: 5'- -aAGGCcGUauuccuucaaugcUGCCGCCGCGcgcuGCGGCa -3' miRNA: 3'- caUCUGcCA-------------GCGGCGGUGCuu--CGCCG- -5' |
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23942 | 5' | -58.1 | NC_005262.1 | + | 18592 | 0.67 | 0.545208 |
Target: 5'- --cGGCGGacaUGCCGCCuGCGAGGgcaGGCc -3' miRNA: 3'- cauCUGCCa--GCGGCGG-UGCUUCg--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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