Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23943 | 3' | -54.4 | NC_005262.1 | + | 41910 | 0.67 | 0.740771 |
Target: 5'- uCUUCGUgucguccggcugcgcGGUCGGCuucaGCGC-CGAUCc -3' miRNA: 3'- -GAAGCA---------------CCAGUCGug--CGCGuGCUAGc -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 23671 | 0.67 | 0.7314 |
Target: 5'- --cCGUGGaugccgcccgagCGGCGCgugugggucuaccgGCGCACGGUCGa -3' miRNA: 3'- gaaGCACCa-----------GUCGUG--------------CGCGUGCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 22602 | 0.68 | 0.715611 |
Target: 5'- -cUCGaagcGGUCgccgGGCGCGCaCGCGAUCGc -3' miRNA: 3'- gaAGCa---CCAG----UCGUGCGcGUGCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 17885 | 0.68 | 0.704981 |
Target: 5'- ----uUGaUCGGCGCGCGCAucCGGUCGg -3' miRNA: 3'- gaagcACcAGUCGUGCGCGU--GCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 2027 | 0.68 | 0.704981 |
Target: 5'- -cUgGUcGGUCGGCGCGUGCuACGAg-- -3' miRNA: 3'- gaAgCA-CCAGUCGUGCGCG-UGCUagc -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 55025 | 0.68 | 0.694282 |
Target: 5'- --aCGcGGUCGGCGCGgGCAagacguucacgaUGAUCGc -3' miRNA: 3'- gaaGCaCCAGUCGUGCgCGU------------GCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 48178 | 0.68 | 0.687833 |
Target: 5'- -aUCGUccGGuaauuUCGGCACGCgggacaguaauaaggGCGCGGUCGg -3' miRNA: 3'- gaAGCA--CC-----AGUCGUGCG---------------CGUGCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 24029 | 0.68 | 0.683523 |
Target: 5'- -gUCGggaUGGUCGGCugGCgGCuuguCGAUCc -3' miRNA: 3'- gaAGC---ACCAGUCGugCG-CGu---GCUAGc -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 57137 | 0.68 | 0.683523 |
Target: 5'- -cUCGUGGaUCgAGgACgGCGaCGCGAUCGa -3' miRNA: 3'- gaAGCACC-AG-UCgUG-CGC-GUGCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 36444 | 0.68 | 0.677044 |
Target: 5'- --aCGUGGUCGuucaagaagucuggcGCAUGgGCGCGcgCGa -3' miRNA: 3'- gaaGCACCAGU---------------CGUGCgCGUGCuaGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 60401 | 0.69 | 0.651002 |
Target: 5'- -aUCGUcGG-CGGCAUgGCGCACGugGUCGa -3' miRNA: 3'- gaAGCA-CCaGUCGUG-CGCGUGC--UAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 33893 | 0.69 | 0.640114 |
Target: 5'- -aUCGUGcGUCGGCcgGCG-GCcCGAUCGg -3' miRNA: 3'- gaAGCAC-CAGUCG--UGCgCGuGCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 5289 | 0.7 | 0.585756 |
Target: 5'- -gUCGUGGUCGauCACGCGguCGAggCGg -3' miRNA: 3'- gaAGCACCAGUc-GUGCGCguGCUa-GC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 40463 | 0.7 | 0.585756 |
Target: 5'- --cCGUGGUCgAGCGCGUGCuCGugcgCGg -3' miRNA: 3'- gaaGCACCAG-UCGUGCGCGuGCua--GC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 10231 | 0.7 | 0.574964 |
Target: 5'- -----cGGUCAGCGCGUGCGCGc-CGa -3' miRNA: 3'- gaagcaCCAGUCGUGCGCGUGCuaGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 9359 | 0.71 | 0.53233 |
Target: 5'- aCUUCc-GGUCGGCGCGCGCgGCGGc-- -3' miRNA: 3'- -GAAGcaCCAGUCGUGCGCG-UGCUagc -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 3712 | 0.72 | 0.490887 |
Target: 5'- -aUCGUGcccGUCAGCGCGuCGCGCGcggCGu -3' miRNA: 3'- gaAGCAC---CAGUCGUGC-GCGUGCua-GC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 51417 | 0.72 | 0.480757 |
Target: 5'- --gCGUGcUCGGCgGCGCGCGCGAgggCGa -3' miRNA: 3'- gaaGCACcAGUCG-UGCGCGUGCUa--GC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 5269 | 0.72 | 0.480757 |
Target: 5'- -cUCGUGcagCAGCACGgGCaggGCGGUCGa -3' miRNA: 3'- gaAGCACca-GUCGUGCgCG---UGCUAGC- -5' |
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23943 | 3' | -54.4 | NC_005262.1 | + | 35321 | 0.72 | 0.47073 |
Target: 5'- --gCGUGGUCAugaucgcgcaguGCAUGCGCAUcAUCGg -3' miRNA: 3'- gaaGCACCAGU------------CGUGCGCGUGcUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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