miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 5' -60 NC_005262.1 + 60115 0.67 0.434087
Target:  5'- gGUCGGgcacGAGgGCGccagCGUCGCgGCGAAg -3'
miRNA:   3'- -CAGCCa---CUCgCGCa---GCGGCG-CGCUUa -5'
23943 5' -60 NC_005262.1 + 23243 0.67 0.434087
Target:  5'- -cCGGUGuugcccGGCGCGUaagagccgccCGCCGCGaCGAu- -3'
miRNA:   3'- caGCCAC------UCGCGCA----------GCGGCGC-GCUua -5'
23943 5' -60 NC_005262.1 + 39919 0.67 0.424854
Target:  5'- --gGGUGAcacaauacGUGUG-CGCCGCGCGGGa -3'
miRNA:   3'- cagCCACU--------CGCGCaGCGGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 51575 0.67 0.423937
Target:  5'- -gCGGagcuUGAGCGCGcCGCCcaucaggGCGUGAAg -3'
miRNA:   3'- caGCC----ACUCGCGCaGCGG-------CGCGCUUa -5'
23943 5' -60 NC_005262.1 + 35988 0.68 0.406746
Target:  5'- -gCGG-GAucGUGCGUuccacgUGCCGCGCGAGUg -3'
miRNA:   3'- caGCCaCU--CGCGCA------GCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 54551 0.68 0.406746
Target:  5'- -cCGGccAGCGaCGUCGCCGCguucGCGAGc -3'
miRNA:   3'- caGCCacUCGC-GCAGCGGCG----CGCUUa -5'
23943 5' -60 NC_005262.1 + 27930 0.68 0.397875
Target:  5'- --aGGUGcGCGCGUCGC-GCGCa--- -3'
miRNA:   3'- cagCCACuCGCGCAGCGgCGCGcuua -5'
23943 5' -60 NC_005262.1 + 7533 0.68 0.36366
Target:  5'- uUCGGcG-GCGCGUCGgCGCGCu--- -3'
miRNA:   3'- cAGCCaCuCGCGCAGCgGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 54185 0.69 0.34573
Target:  5'- -cCGGUccuguccGAGCGCGUgcuccagCGcCCGCGCGAGc -3'
miRNA:   3'- caGCCA-------CUCGCGCA-------GC-GGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 33323 0.69 0.331539
Target:  5'- aGUCGGac-GCaacuGCGUCGCUGCGCGGc- -3'
miRNA:   3'- -CAGCCacuCG----CGCAGCGGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 48441 0.69 0.331539
Target:  5'- -gCGGcaUGAccacgcGCGCGUaUGCCGCGCGGAUc -3'
miRNA:   3'- caGCC--ACU------CGCGCA-GCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 5169 0.69 0.316278
Target:  5'- aUCGGUGAcgGCcgGCGUCGCgGgCGCGGGc -3'
miRNA:   3'- cAGCCACU--CG--CGCAGCGgC-GCGCUUa -5'
23943 5' -60 NC_005262.1 + 32734 0.7 0.308848
Target:  5'- gGUCGGcGAGCGCGUCGgCGU-CGGu- -3'
miRNA:   3'- -CAGCCaCUCGCGCAGCgGCGcGCUua -5'
23943 5' -60 NC_005262.1 + 1981 0.7 0.308848
Target:  5'- uUCGGguacucGAGCGCGaggcaugCGCCGCGCa--- -3'
miRNA:   3'- cAGCCa-----CUCGCGCa------GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 18155 0.7 0.294391
Target:  5'- -cCGG-GAGCGCGUgccCGCCugaucGCGCGAGc -3'
miRNA:   3'- caGCCaCUCGCGCA---GCGG-----CGCGCUUa -5'
23943 5' -60 NC_005262.1 + 32606 0.7 0.280466
Target:  5'- uGUCGGcGAGCGUGaUCGUCGCGUc--- -3'
miRNA:   3'- -CAGCCaCUCGCGC-AGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 49224 0.71 0.254195
Target:  5'- -gCGGUGcGCGUGagCGCCGCgGCGAGa -3'
miRNA:   3'- caGCCACuCGCGCa-GCGGCG-CGCUUa -5'
23943 5' -60 NC_005262.1 + 32898 0.71 0.247951
Target:  5'- cGUCGGccaagccGGCgGCGUCGCaCGCGCGAc- -3'
miRNA:   3'- -CAGCCac-----UCG-CGCAGCG-GCGCGCUua -5'
23943 5' -60 NC_005262.1 + 29298 0.71 0.247951
Target:  5'- cUCGcaGAagucGCGCGcCGCCGCGCGGAUg -3'
miRNA:   3'- cAGCcaCU----CGCGCaGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 6901 0.71 0.247951
Target:  5'- -cCGGcGAGCGUGUUGUCGCGCu--- -3'
miRNA:   3'- caGCCaCUCGCGCAGCGGCGCGcuua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.