miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23944 3' -54.8 NC_005262.1 + 5313 0.67 0.753908
Target:  5'- gCGGUcgGAGCuGGCCGgcaggagcuUCGCaCCGCGCu- -3'
miRNA:   3'- -GCUAa-UUCG-CUGGU---------AGCG-GGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 44091 0.67 0.753908
Target:  5'- aCGAcgAGGauCGGCUgAUCGCCUGgGCGAa -3'
miRNA:   3'- -GCUaaUUC--GCUGG-UAGCGGGCgCGCU- -5'
23944 3' -54.8 NC_005262.1 + 33858 0.67 0.753908
Target:  5'- uGAUcGAGUgGAUCAacgaCGCCgCGCGCGAg -3'
miRNA:   3'- gCUAaUUCG-CUGGUa---GCGG-GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 11583 0.67 0.753908
Target:  5'- cCGGc--GGCGGCCAgCGCUCGaGCGAc -3'
miRNA:   3'- -GCUaauUCGCUGGUaGCGGGCgCGCU- -5'
23944 3' -54.8 NC_005262.1 + 17256 0.67 0.753908
Target:  5'- gGAgc-GGCGGCCggCGCCgcgcugggcugcUGCGCGGg -3'
miRNA:   3'- gCUaauUCGCUGGuaGCGG------------GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 38733 0.67 0.753908
Target:  5'- uGAUgcuGCGGUCAUCGUCCGUgguguGCGAu -3'
miRNA:   3'- gCUAauuCGCUGGUAGCGGGCG-----CGCU- -5'
23944 3' -54.8 NC_005262.1 + 890 0.67 0.753908
Target:  5'- aGAUUGcGCG-CCAgcUCGUCgGCGCGc -3'
miRNA:   3'- gCUAAUuCGCuGGU--AGCGGgCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 52750 0.67 0.753908
Target:  5'- gCGAcgcuGCGGCCuGUUGCUgCGCGCGGu -3'
miRNA:   3'- -GCUaauuCGCUGG-UAGCGG-GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 40577 0.67 0.752888
Target:  5'- gCGGUgccGCGACCGUCGCgCUgacggugGCGCa- -3'
miRNA:   3'- -GCUAauuCGCUGGUAGCG-GG-------CGCGcu -5'
23944 3' -54.8 NC_005262.1 + 3267 0.67 0.743659
Target:  5'- gCGGUcgAAGuCGACCGUCacgcucuuggcgGCCUGCGCc- -3'
miRNA:   3'- -GCUAa-UUC-GCUGGUAG------------CGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 2290 0.67 0.743659
Target:  5'- cCGGUcGAGCGAgaUCAUuuccgacuguucCGgCCGCGCGAa -3'
miRNA:   3'- -GCUAaUUCGCU--GGUA------------GCgGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 51011 0.67 0.743659
Target:  5'- ----gAAGCGACCggCGaCCGCGCc- -3'
miRNA:   3'- gcuaaUUCGCUGGuaGCgGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 37931 0.67 0.742628
Target:  5'- aCGAUUGGcGCGcauggaccgcgacGCCAaCGCCCGUgaGCGGu -3'
miRNA:   3'- -GCUAAUU-CGC-------------UGGUaGCGGGCG--CGCU- -5'
23944 3' -54.8 NC_005262.1 + 12968 0.67 0.7333
Target:  5'- gGAUgccAGCGugcCCGUCuCCgGCGCGAa -3'
miRNA:   3'- gCUAau-UCGCu--GGUAGcGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 9739 0.67 0.7333
Target:  5'- aCGGUcacGGUGccgUCGUCGCCCGUGCGc -3'
miRNA:   3'- -GCUAau-UCGCu--GGUAGCGGGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 5704 0.67 0.7333
Target:  5'- uCGAUcAGGCGGuuGUUGCCguCGCGCa- -3'
miRNA:   3'- -GCUAaUUCGCUggUAGCGG--GCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 2514 0.67 0.722843
Target:  5'- cCGAUaGAGCGGucgUCAUCGCgUgGCGUGAa -3'
miRNA:   3'- -GCUAaUUCGCU---GGUAGCG-GgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 20915 0.67 0.722843
Target:  5'- aCGGaUAGGCGAUCgcauagccgagGUCgacgaGCCCGCGCGc -3'
miRNA:   3'- -GCUaAUUCGCUGG-----------UAG-----CGGGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 21793 0.67 0.722843
Target:  5'- cCGAUUcgAGGCGGgcguUCGUCGCguuCUGCGCGGc -3'
miRNA:   3'- -GCUAA--UUCGCU----GGUAGCG---GGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 20445 0.67 0.712297
Target:  5'- aCGGUUccGGC-ACCGUCGCC-GCGUGGg -3'
miRNA:   3'- -GCUAAu-UCGcUGGUAGCGGgCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.