miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23944 5' -50.5 NC_005262.1 + 30536 0.66 0.966683
Target:  5'- gCCUCGcGGAUCGacaggaagcGCUCgACGUgcgCGUCGa -3'
miRNA:   3'- -GGAGCaUCUAGUa--------CGAG-UGCA---GCAGC- -5'
23944 5' -50.5 NC_005262.1 + 63037 0.66 0.963145
Target:  5'- aCCUCGgcgacgAGcgCGUGUUCACGacCGUUc -3'
miRNA:   3'- -GGAGCa-----UCuaGUACGAGUGCa-GCAGc -5'
23944 5' -50.5 NC_005262.1 + 6944 0.66 0.959355
Target:  5'- gCUUGUcacgccGGAgcuUGUUCugGUCGUCGu -3'
miRNA:   3'- gGAGCA------UCUaguACGAGugCAGCAGC- -5'
23944 5' -50.5 NC_005262.1 + 12456 0.66 0.950988
Target:  5'- uCCUCGUcgAGA-CGUcGCUCACGgggCGcCGc -3'
miRNA:   3'- -GGAGCA--UCUaGUA-CGAGUGCa--GCaGC- -5'
23944 5' -50.5 NC_005262.1 + 41112 0.67 0.946401
Target:  5'- aCgUCG-AGAUCGUGCgcgUCACGgcgCGcUCGg -3'
miRNA:   3'- -GgAGCaUCUAGUACG---AGUGCa--GC-AGC- -5'
23944 5' -50.5 NC_005262.1 + 36939 0.67 0.941541
Target:  5'- aCCUCGgugccgAGAUCAccacGCUCGCGcCGcugcUCGu -3'
miRNA:   3'- -GGAGCa-----UCUAGUa---CGAGUGCaGC----AGC- -5'
23944 5' -50.5 NC_005262.1 + 61049 0.67 0.936404
Target:  5'- aCUUCGgcagccAGAUCGUGCcggaUACGcCGUCGa -3'
miRNA:   3'- -GGAGCa-----UCUAGUACGa---GUGCaGCAGC- -5'
23944 5' -50.5 NC_005262.1 + 9493 0.67 0.930989
Target:  5'- uCCUgGcGGcUCAUGUUCgagaggcgcgccACGUCGUCGa -3'
miRNA:   3'- -GGAgCaUCuAGUACGAG------------UGCAGCAGC- -5'
23944 5' -50.5 NC_005262.1 + 35165 0.68 0.919318
Target:  5'- cCUUCGacaGGcgCuUGUUCACGUCGUCc -3'
miRNA:   3'- -GGAGCa--UCuaGuACGAGUGCAGCAGc -5'
23944 5' -50.5 NC_005262.1 + 29666 0.68 0.919318
Target:  5'- --aCGUAGAagAUGCgcggugCGCGcUCGUCGa -3'
miRNA:   3'- ggaGCAUCUagUACGa-----GUGC-AGCAGC- -5'
23944 5' -50.5 NC_005262.1 + 29206 0.68 0.90653
Target:  5'- aUCUCGUGGAUCAcgGCgccgCACGgCG-CGc -3'
miRNA:   3'- -GGAGCAUCUAGUa-CGa---GUGCaGCaGC- -5'
23944 5' -50.5 NC_005262.1 + 3691 0.7 0.835936
Target:  5'- cCCUCGUGcccgaccauguuGAUCGUGCccgucagCGCGUCG-CGc -3'
miRNA:   3'- -GGAGCAU------------CUAGUACGa------GUGCAGCaGC- -5'
23944 5' -50.5 NC_005262.1 + 11287 0.74 0.639419
Target:  5'- gCC-CGU---UCAUGCUCugGCGUCGUCGg -3'
miRNA:   3'- -GGaGCAucuAGUACGAG--UGCAGCAGC- -5'
23944 5' -50.5 NC_005262.1 + 35661 0.74 0.639419
Target:  5'- aCUCGgugccgcAGcUCGUGCUCACGUCGagCGg -3'
miRNA:   3'- gGAGCa------UCuAGUACGAGUGCAGCa-GC- -5'
23944 5' -50.5 NC_005262.1 + 35782 0.75 0.562285
Target:  5'- cCCgCGUAGAUCG-GCUCGcCGUCGUUc -3'
miRNA:   3'- -GGaGCAUCUAGUaCGAGU-GCAGCAGc -5'
23944 5' -50.5 NC_005262.1 + 9457 0.76 0.48787
Target:  5'- uCCUCGUAGAUCgagGUGCcgaGCG-CGUCGa -3'
miRNA:   3'- -GGAGCAUCUAG---UACGag-UGCaGCAGC- -5'
23944 5' -50.5 NC_005262.1 + 11922 0.78 0.390545
Target:  5'- gCgUCGgcucGGUCGUGCUCGCGUCGUUc -3'
miRNA:   3'- -GgAGCau--CUAGUACGAGUGCAGCAGc -5'
23944 5' -50.5 NC_005262.1 + 19840 1.11 0.003543
Target:  5'- gCCUCGUAGAUCAUGCUCACGUCGUCGc -3'
miRNA:   3'- -GGAGCAUCUAGUACGAGUGCAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.