miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23945 3' -58.3 NC_005262.1 + 199 0.66 0.646407
Target:  5'- cCGGUGACGauCCgCAGCgCGCGCa-- -3'
miRNA:   3'- -GCCACUGCgcGGaGUUGgGCGUGacc -5'
23945 3' -58.3 NC_005262.1 + 2462 0.67 0.562239
Target:  5'- aCGGUGGacguugagcaUGCGCgUgGugCCGCGCuUGGc -3'
miRNA:   3'- -GCCACU----------GCGCGgAgUugGGCGUG-ACC- -5'
23945 3' -58.3 NC_005262.1 + 2825 0.69 0.460962
Target:  5'- -----cUGCGCCUCGACCucguuugCGCGCUGGc -3'
miRNA:   3'- gccacuGCGCGGAGUUGG-------GCGUGACC- -5'
23945 3' -58.3 NC_005262.1 + 3695 0.69 0.433657
Target:  5'- aCGGUGAUgccgGCGCCgaCAAUCUGacugaGCUGGg -3'
miRNA:   3'- -GCCACUG----CGCGGa-GUUGGGCg----UGACC- -5'
23945 3' -58.3 NC_005262.1 + 5258 0.66 0.593618
Target:  5'- uGGUGGaaCGCCUCGugCagcaGCACgGGc -3'
miRNA:   3'- gCCACUgcGCGGAGUugGg---CGUGaCC- -5'
23945 3' -58.3 NC_005262.1 + 7244 0.67 0.531325
Target:  5'- gCGGaUGAUGCGCCc---CUCGCGCUGc -3'
miRNA:   3'- -GCC-ACUGCGCGGaguuGGGCGUGACc -5'
23945 3' -58.3 NC_005262.1 + 7791 0.66 0.646407
Target:  5'- gCGGUGAUGCGCugCUCGAgC-GCcuuCUGGu -3'
miRNA:   3'- -GCCACUGCGCG--GAGUUgGgCGu--GACC- -5'
23945 3' -58.3 NC_005262.1 + 9363 0.69 0.424461
Target:  5'- cCGGUcGGCGCGCgCggCGGCCUGCGCc-- -3'
miRNA:   3'- -GCCA-CUGCGCG-Ga-GUUGGGCGUGacc -5'
23945 3' -58.3 NC_005262.1 + 10761 0.66 0.625267
Target:  5'- aCGGuUGugGUGa-UCcGCCCGCGCcGGg -3'
miRNA:   3'- -GCC-ACugCGCggAGuUGGGCGUGaCC- -5'
23945 3' -58.3 NC_005262.1 + 11951 0.69 0.428125
Target:  5'- gCGGcGcCGCGCUUCAGCacuucgcgacgucggCCGCGCUGa -3'
miRNA:   3'- -GCCaCuGCGCGGAGUUG---------------GGCGUGACc -5'
23945 3' -58.3 NC_005262.1 + 12883 0.71 0.32383
Target:  5'- aCGGUGACGCucguGCgcaUCAGCCCcgGCcuGCUGGa -3'
miRNA:   3'- -GCCACUGCG----CGg--AGUUGGG--CG--UGACC- -5'
23945 3' -58.3 NC_005262.1 + 14221 0.67 0.551874
Target:  5'- aCGGcgGGCGCGaUgUCGACCaCGCACgagcaGGa -3'
miRNA:   3'- -GCCa-CUGCGC-GgAGUUGG-GCGUGa----CC- -5'
23945 3' -58.3 NC_005262.1 + 16500 0.67 0.583119
Target:  5'- gGGcGAgGCGCUg-GGCgCUGCGCUGGg -3'
miRNA:   3'- gCCaCUgCGCGGagUUG-GGCGUGACC- -5'
23945 3' -58.3 NC_005262.1 + 16643 0.66 0.614701
Target:  5'- uGGUG-CGCGCCUC-GCCgGuCGCg-- -3'
miRNA:   3'- gCCACuGCGCGGAGuUGGgC-GUGacc -5'
23945 3' -58.3 NC_005262.1 + 17253 0.66 0.614701
Target:  5'- gCGGgagcGGCG-GCCg--GCgCCGCGCUGGg -3'
miRNA:   3'- -GCCa---CUGCgCGGaguUG-GGCGUGACC- -5'
23945 3' -58.3 NC_005262.1 + 17255 0.67 0.541567
Target:  5'- aGGaGACGCGCCuguUCGAgCUGCGCg-- -3'
miRNA:   3'- gCCaCUGCGCGG---AGUUgGGCGUGacc -5'
23945 3' -58.3 NC_005262.1 + 19480 1.11 0.000542
Target:  5'- cCGGUGACGCGCCUCAACCCGCACUGGa -3'
miRNA:   3'- -GCCACUGCGCGGAGUUGGGCGUGACC- -5'
23945 3' -58.3 NC_005262.1 + 22693 0.72 0.287472
Target:  5'- ---aGACGCGCCUCGACCgccuCGCauggaucgACUGGa -3'
miRNA:   3'- gccaCUGCGCGGAGUUGG----GCG--------UGACC- -5'
23945 3' -58.3 NC_005262.1 + 24935 0.67 0.562239
Target:  5'- gCGG-GAUGCGCa-CAugCCGCGC-GGc -3'
miRNA:   3'- -GCCaCUGCGCGgaGUugGGCGUGaCC- -5'
23945 3' -58.3 NC_005262.1 + 28764 0.68 0.522168
Target:  5'- uGGUGACuccuuagaagaaauuCGCCUUgguacggacgGGCCCGCGCUGc -3'
miRNA:   3'- gCCACUGc--------------GCGGAG----------UUGGGCGUGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.