Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23945 | 3' | -58.3 | NC_005262.1 | + | 7244 | 0.67 | 0.531325 |
Target: 5'- gCGGaUGAUGCGCCc---CUCGCGCUGc -3' miRNA: 3'- -GCC-ACUGCGCGGaguuGGGCGUGACc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 28764 | 0.68 | 0.522168 |
Target: 5'- uGGUGACuccuuagaagaaauuCGCCUUgguacggacgGGCCCGCGCUGc -3' miRNA: 3'- gCCACUGc--------------GCGGAG----------UUGGGCGUGACc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 61134 | 0.68 | 0.521154 |
Target: 5'- gCGGccagGACGcCGCC-CGGCgCCGCGCaGGc -3' miRNA: 3'- -GCCa---CUGC-GCGGaGUUG-GGCGUGaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 54940 | 0.68 | 0.521154 |
Target: 5'- gGcGUGucgcUGCGCUUCAACCUGCGCg-- -3' miRNA: 3'- gC-CACu---GCGCGGAGUUGGGCGUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 34797 | 0.68 | 0.471555 |
Target: 5'- aGGUGugGCuucGCCUCAAgCCGUcCgaGGa -3' miRNA: 3'- gCCACugCG---CGGAGUUgGGCGuGa-CC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 2825 | 0.69 | 0.460962 |
Target: 5'- -----cUGCGCCUCGACCucguuugCGCGCUGGc -3' miRNA: 3'- gccacuGCGCGGAGUUGG-------GCGUGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 53094 | 0.69 | 0.433657 |
Target: 5'- cCGcGUGcGCGCgGCCUCGAUCUGCGCa-- -3' miRNA: 3'- -GC-CAC-UGCG-CGGAGUUGGGCGUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 54846 | 0.69 | 0.433657 |
Target: 5'- gGGUGGaGUGCgUC-GCCCGCGCgagGGu -3' miRNA: 3'- gCCACUgCGCGgAGuUGGGCGUGa--CC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 3695 | 0.69 | 0.433657 |
Target: 5'- aCGGUGAUgccgGCGCCgaCAAUCUGacugaGCUGGg -3' miRNA: 3'- -GCCACUG----CGCGGa-GUUGGGCg----UGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 11951 | 0.69 | 0.428125 |
Target: 5'- gCGGcGcCGCGCUUCAGCacuucgcgacgucggCCGCGCUGa -3' miRNA: 3'- -GCCaCuGCGCGGAGUUG---------------GGCGUGACc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 9363 | 0.69 | 0.424461 |
Target: 5'- cCGGUcGGCGCGCgCggCGGCCUGCGCc-- -3' miRNA: 3'- -GCCA-CUGCGCG-Ga-GUUGGGCGUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 46399 | 0.7 | 0.397589 |
Target: 5'- ---aGGCGCGCCUCGucgggcuggGCCCGCAa-GGu -3' miRNA: 3'- gccaCUGCGCGGAGU---------UGGGCGUgaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 30390 | 0.71 | 0.347239 |
Target: 5'- gCGGgaacGugGCGCCUgCGACCUugaGCUGGg -3' miRNA: 3'- -GCCa---CugCGCGGA-GUUGGGcg-UGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 30826 | 0.71 | 0.331501 |
Target: 5'- cCGGUG-CGCGUCUCGGCgaCGCGCa-- -3' miRNA: 3'- -GCCACuGCGCGGAGUUGg-GCGUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 12883 | 0.71 | 0.32383 |
Target: 5'- aCGGUGACGCucguGCgcaUCAGCCCcgGCcuGCUGGa -3' miRNA: 3'- -GCCACUGCG----CGg--AGUUGGG--CG--UGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 58859 | 0.72 | 0.287472 |
Target: 5'- uCGGcGACGUcacGCCggcgCAGCCCGCGCguUGGc -3' miRNA: 3'- -GCCaCUGCG---CGGa---GUUGGGCGUG--ACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 22693 | 0.72 | 0.287472 |
Target: 5'- ---aGACGCGCCUCGACCgccuCGCauggaucgACUGGa -3' miRNA: 3'- gccaCUGCGCGGAGUUGG----GCG--------UGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 19480 | 1.11 | 0.000542 |
Target: 5'- cCGGUGACGCGCCUCAACCCGCACUGGa -3' miRNA: 3'- -GCCACUGCGCGGAGUUGGGCGUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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