miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23945 5' -50.4 NC_005262.1 + 50609 0.67 0.941657
Target:  5'- cGCGAGCGCUuCGG-CuGAAccuGUUGCu -3'
miRNA:   3'- cCGCUUGCGAcGCCaGuCUUu--UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 20583 0.67 0.941657
Target:  5'- cGGCGAgcaGCGC-GCGGcgcgccgCAGGGcuGUUGCg -3'
miRNA:   3'- -CCGCU---UGCGaCGCCa------GUCUUu-UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 19741 0.67 0.936476
Target:  5'- cGGUucauAGCGUUuCGGUCAGAAuugCGCa -3'
miRNA:   3'- -CCGc---UUGCGAcGCCAGUCUUuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 44099 0.67 0.936476
Target:  5'- gGGUGGugucgaugacGCGCUGCGGaacgu-AAUCGCu -3'
miRNA:   3'- -CCGCU----------UGCGACGCCagucuuUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 40042 0.67 0.931571
Target:  5'- uGUGAaaaagcccgcACGCUGCGGgcagguuggucaaagCAGGGuGAUCGCc -3'
miRNA:   3'- cCGCU----------UGCGACGCCa--------------GUCUU-UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 7482 0.67 0.931012
Target:  5'- aGCGGGCuaUccGCGGUCcuGAAcugGAUCGCg -3'
miRNA:   3'- cCGCUUGcgA--CGCCAGu-CUU---UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 38560 0.67 0.931012
Target:  5'- cGGCGuuGCGC-GCGGUucgggCGGAAGGgcaGCa -3'
miRNA:   3'- -CCGCu-UGCGaCGCCA-----GUCUUUUag-CG- -5'
23945 5' -50.4 NC_005262.1 + 13229 0.67 0.931012
Target:  5'- aGCGGGCucggGCUGCGGUugaaCGGGug--CGCg -3'
miRNA:   3'- cCGCUUG----CGACGCCA----GUCUuuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 3249 0.67 0.931012
Target:  5'- cGGCGucAGCGUgcccuUGCGGUCG--AAGUCGa -3'
miRNA:   3'- -CCGC--UUGCG-----ACGCCAGUcuUUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 32529 0.67 0.931012
Target:  5'- cGCGGACGaCUGCGG-CuGccGAUCGa -3'
miRNA:   3'- cCGCUUGC-GACGCCaGuCuuUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 14845 0.67 0.93045
Target:  5'- cGGCGucAUGCUggcgaccaucuggGCGGuaucgcgcuUCAGGAGGUCGUc -3'
miRNA:   3'- -CCGCu-UGCGA-------------CGCC---------AGUCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 36730 0.67 0.925262
Target:  5'- gGGCuGGCGCcGCGGgcgCAGuucugCGCa -3'
miRNA:   3'- -CCGcUUGCGaCGCCa--GUCuuuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 55005 0.67 0.925262
Target:  5'- aGGCGAcauguaccucGCGCacGCGGUCGGcgcgggcaaGAcguucacgauGAUCGCg -3'
miRNA:   3'- -CCGCU----------UGCGa-CGCCAGUC---------UU----------UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 43842 0.67 0.924672
Target:  5'- cGGcCGcGCGCgGCGGUgcgccggCAGGAccucggcgcGAUCGCg -3'
miRNA:   3'- -CC-GCuUGCGaCGCCA-------GUCUU---------UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 10858 0.67 0.919227
Target:  5'- cGGCGAA-GCccagGCGGcgCAGGccGUCGUa -3'
miRNA:   3'- -CCGCUUgCGa---CGCCa-GUCUuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 36472 0.68 0.912907
Target:  5'- gGGCGcGCGCgagGCuGG-CGGAc-AUCGCg -3'
miRNA:   3'- -CCGCuUGCGa--CG-CCaGUCUuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 14486 0.68 0.912907
Target:  5'- cGGCGAGCcugcuGCUGaCGGUCcgcgcuacaAGgcGAUCGg -3'
miRNA:   3'- -CCGCUUG-----CGAC-GCCAG---------UCuuUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 12171 0.68 0.912907
Target:  5'- aGGCc-GCGCUgucugcGCGG-CAGGAgcaAAUCGCg -3'
miRNA:   3'- -CCGcuUGCGA------CGCCaGUCUU---UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 11244 0.68 0.912907
Target:  5'- aGCGAcgaucGCGCUGCGcaccuguuUCAGGAGcacauUCGCa -3'
miRNA:   3'- cCGCU-----UGCGACGCc-------AGUCUUUu----AGCG- -5'
23945 5' -50.4 NC_005262.1 + 6099 0.68 0.906305
Target:  5'- cGGUGAuccgcACGUUGCGGaacggCGGcacAGUCGCc -3'
miRNA:   3'- -CCGCU-----UGCGACGCCa----GUCuu-UUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.