Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23946 | 3' | -56.2 | NC_005262.1 | + | 1445 | 0.66 | 0.710475 |
Target: 5'- uUCGAcgGUGUAgGGcugcauGGUGCGGCACa- -3' miRNA: 3'- gAGCUa-CGCGUgCU------UCACGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 63592 | 0.66 | 0.721042 |
Target: 5'- gCUCG-UGCGCGCGc--UGCGGaucguCACCGg -3' miRNA: 3'- -GAGCuACGCGUGCuucACGCC-----GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 56095 | 0.66 | 0.721042 |
Target: 5'- --aGAUGCaGCuCGAGGagGCGGCGCa- -3' miRNA: 3'- gagCUACG-CGuGCUUCa-CGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 27930 | 0.66 | 0.714712 |
Target: 5'- --aGGUGCGCGCGucgcgcGcacaaacaucugggcGGUcGCGGCGCCGa -3' miRNA: 3'- gagCUACGCGUGC------U---------------UCA-CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 30722 | 0.66 | 0.714712 |
Target: 5'- -cCGAaGCGCACGAGGagaagcugaugaagaUGuCGGcCGCCGa -3' miRNA: 3'- gaGCUaCGCGUGCUUC---------------AC-GCC-GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 13146 | 0.66 | 0.721042 |
Target: 5'- -cCGccGCGCGCGcuGcGCGGCACa- -3' miRNA: 3'- gaGCuaCGCGUGCuuCaCGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 42300 | 0.66 | 0.709414 |
Target: 5'- gCUCGGUGCGCcacugguacgcAUGGccgaugccccagcAGUaGCGGCACgCAa -3' miRNA: 3'- -GAGCUACGCG-----------UGCU-------------UCA-CGCCGUG-GU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 13234 | 0.66 | 0.704098 |
Target: 5'- gCUCGGgcUGCGguUGAacgGGUGCGcgagccugcucaucaGCACCAg -3' miRNA: 3'- -GAGCU--ACGCguGCU---UCACGC---------------CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 14043 | 0.66 | 0.678367 |
Target: 5'- cCUCGGgcgcggGCGCcgccgGCGucGGUGCGGCuucgGCCGc -3' miRNA: 3'- -GAGCUa-----CGCG-----UGCu-UCACGCCG----UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 27054 | 0.66 | 0.721042 |
Target: 5'- aUCGucGUGCGCA-GAAcugcgcccGCGGCGCCAg -3' miRNA: 3'- gAGC--UACGCGUgCUUca------CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 44708 | 0.66 | 0.721042 |
Target: 5'- aUCGccGCGCGCGAGGaaaUGCaGCucgGCCGc -3' miRNA: 3'- gAGCuaCGCGUGCUUC---ACGcCG---UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 4551 | 0.66 | 0.709414 |
Target: 5'- aUCGugcGCGCGCGGcgcaucucgcgccAGcgGCGGCGCUg -3' miRNA: 3'- gAGCua-CGCGUGCU-------------UCa-CGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 41424 | 0.66 | 0.666483 |
Target: 5'- cCUCGuAUGCGC-CGAcuaacacGG-GCGGCGCg- -3' miRNA: 3'- -GAGC-UACGCGuGCU-------UCaCGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 6096 | 0.66 | 0.667565 |
Target: 5'- uCUCGGUGaucCGCACGuugcGGaacgGCGGCACa- -3' miRNA: 3'- -GAGCUAC---GCGUGCu---UCa---CGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 21235 | 0.66 | 0.678367 |
Target: 5'- gUCGAccUGaacgGCACGAAG-GCGGCGauCCGa -3' miRNA: 3'- gAGCU--ACg---CGUGCUUCaCGCCGU--GGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 33136 | 0.66 | 0.689127 |
Target: 5'- aUCGAaugcauucUGCGU-CGuAAGgGCGGCACCGu -3' miRNA: 3'- gAGCU--------ACGCGuGC-UUCaCGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 62028 | 0.66 | 0.693416 |
Target: 5'- aUCGccGCGCGCGAuccuccuccucgaUGCGGCGCa- -3' miRNA: 3'- gAGCuaCGCGUGCUuc-----------ACGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 61638 | 0.66 | 0.710475 |
Target: 5'- gCUCGAggGCGaggAgGAAGUGCuGUACCGc -3' miRNA: 3'- -GAGCUa-CGCg--UgCUUCACGcCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 11372 | 0.66 | 0.699833 |
Target: 5'- -aCGAUgaaGCGCACGAcGUucgcgcGCGGCuCCAc -3' miRNA: 3'- gaGCUA---CGCGUGCUuCA------CGCCGuGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60624 | 0.66 | 0.699833 |
Target: 5'- -aCGccAUGCGCACGcuggcGAGcgGCGaGCACCGc -3' miRNA: 3'- gaGC--UACGCGUGC-----UUCa-CGC-CGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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