Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23946 | 3' | -56.2 | NC_005262.1 | + | 43878 | 0.68 | 0.558287 |
Target: 5'- -gCGAUcGCGCGCauggccgacauGAAGUcgaaggcgucagcGCGGCGCCAa -3' miRNA: 3'- gaGCUA-CGCGUG-----------CUUCA-------------CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 14166 | 0.68 | 0.559354 |
Target: 5'- -cCGccGCGCcgaGGAGUGCGGCaaGCCGc -3' miRNA: 3'- gaGCuaCGCGug-CUUCACGCCG--UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 49831 | 0.68 | 0.568981 |
Target: 5'- -gCGAUggaGCGCGCGAauggcccggugccGGcgGCGGUACCGg -3' miRNA: 3'- gaGCUA---CGCGUGCU-------------UCa-CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 9434 | 0.68 | 0.570054 |
Target: 5'- -gCGAgcGgGUGCGAAgcccgcauuGUGCGGCACCAu -3' miRNA: 3'- gaGCUa-CgCGUGCUU---------CACGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 51421 | 0.68 | 0.570054 |
Target: 5'- gCUCGGcggcGCGCGCGAGG-GCGaUACCGu -3' miRNA: 3'- -GAGCUa---CGCGUGCUUCaCGCcGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 5119 | 0.68 | 0.579726 |
Target: 5'- -aCGAUGCcugccauGCGCGAcGgGCGGCGCUg -3' miRNA: 3'- gaGCUACG-------CGUGCUuCaCGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 18671 | 0.69 | 0.517193 |
Target: 5'- -aCGuucugGCGCGCGguGUucGCGGCACCc -3' miRNA: 3'- gaGCua---CGCGUGCuuCA--CGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60620 | 0.69 | 0.527624 |
Target: 5'- --aGAUGCGCGCGAuuGGcgaccUGCGcauGCGCCAg -3' miRNA: 3'- gagCUACGCGUGCU--UC-----ACGC---CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 50915 | 0.69 | 0.537078 |
Target: 5'- -cUGAUGCGCACGAGcgucaccGUGCacGGCAgCGc -3' miRNA: 3'- gaGCUACGCGUGCUU-------CACG--CCGUgGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 56887 | 0.69 | 0.538132 |
Target: 5'- -aCGA-GCGgAUGAAGUGgGGCACgCGg -3' miRNA: 3'- gaGCUaCGCgUGCUUCACgCCGUG-GU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 46133 | 0.69 | 0.506846 |
Target: 5'- -cCGAgGCGUAUGAGGaguaccaGCGGCGCCu -3' miRNA: 3'- gaGCUaCGCGUGCUUCa------CGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 17545 | 0.69 | 0.506846 |
Target: 5'- -gCGGUcGCGCGCGAg--GCGGCAgCCGc -3' miRNA: 3'- gaGCUA-CGCGUGCUucaCGCCGU-GGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 13041 | 0.69 | 0.537078 |
Target: 5'- -gCGGUGCGCGuCGAGcUGCGGCcgauuguggcuugACCGg -3' miRNA: 3'- gaGCUACGCGU-GCUUcACGCCG-------------UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 7782 | 0.69 | 0.527624 |
Target: 5'- -gCGAgcccGCGCAUGGAGagcuUGCGGCucuCCAu -3' miRNA: 3'- gaGCUa---CGCGUGCUUC----ACGCCGu--GGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 4651 | 0.69 | 0.486425 |
Target: 5'- cCUCcAUGCGCGCGgcGacGCGGC-CCGg -3' miRNA: 3'- -GAGcUACGCGUGCuuCa-CGCCGuGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 11928 | 0.7 | 0.476361 |
Target: 5'- gCUCGGUcGUGCucGCGucGUucGCGGCGCCGc -3' miRNA: 3'- -GAGCUA-CGCG--UGCuuCA--CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 15899 | 0.7 | 0.456551 |
Target: 5'- -cCGcGUGCGCGCGAc--GUGGCGCCGc -3' miRNA: 3'- gaGC-UACGCGUGCUucaCGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 11147 | 0.7 | 0.466402 |
Target: 5'- -aCGAUGCGCACGuucugcucUGCGGUcgcgcGCCAc -3' miRNA: 3'- gaGCUACGCGUGCuuc-----ACGCCG-----UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 61403 | 0.7 | 0.456551 |
Target: 5'- -aCGAccucGCGCGCGAGGcgaagGCGGCgGCCGa -3' miRNA: 3'- gaGCUa---CGCGUGCUUCa----CGCCG-UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 54047 | 0.7 | 0.466402 |
Target: 5'- aUCGA-GCGCACGGGcgacGaCGGCACCGu -3' miRNA: 3'- gAGCUaCGCGUGCUUca--C-GCCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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