Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23946 | 3' | -56.2 | NC_005262.1 | + | 46133 | 0.69 | 0.506846 |
Target: 5'- -cCGAgGCGUAUGAGGaguaccaGCGGCGCCu -3' miRNA: 3'- gaGCUaCGCGUGCUUCa------CGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 17545 | 0.69 | 0.506846 |
Target: 5'- -gCGGUcGCGCGCGAg--GCGGCAgCCGc -3' miRNA: 3'- gaGCUA-CGCGUGCUucaCGCCGU-GGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 13041 | 0.69 | 0.537078 |
Target: 5'- -gCGGUGCGCGuCGAGcUGCGGCcgauuguggcuugACCGg -3' miRNA: 3'- gaGCUACGCGU-GCUUcACGCCG-------------UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60620 | 0.69 | 0.527624 |
Target: 5'- --aGAUGCGCGCGAuuGGcgaccUGCGcauGCGCCAg -3' miRNA: 3'- gagCUACGCGUGCU--UC-----ACGC---CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 56887 | 0.69 | 0.538132 |
Target: 5'- -aCGA-GCGgAUGAAGUGgGGCACgCGg -3' miRNA: 3'- gaGCUaCGCgUGCUUCACgCCGUG-GU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 18671 | 0.69 | 0.517193 |
Target: 5'- -aCGuucugGCGCGCGguGUucGCGGCACCc -3' miRNA: 3'- gaGCua---CGCGUGCuuCA--CGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 8661 | 0.68 | 0.59592 |
Target: 5'- gCUCGAggaauucGCGUGCGAacugcgcgagcauguGGUuCGGCACCAc -3' miRNA: 3'- -GAGCUa------CGCGUGCU---------------UCAcGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60213 | 0.68 | 0.591594 |
Target: 5'- -cCGG-GCGCACGAGGaauCGGaCACCAa -3' miRNA: 3'- gaGCUaCGCGUGCUUCac-GCC-GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 56764 | 0.68 | 0.591594 |
Target: 5'- -gCGAUGCGCGCGAAGgaccUGaCGucCACCGa -3' miRNA: 3'- gaGCUACGCGUGCUUC----AC-GCc-GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 32856 | 0.68 | 0.570054 |
Target: 5'- uUCGGccCGCACG---UGCGGCGCCGa -3' miRNA: 3'- gAGCUacGCGUGCuucACGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 9434 | 0.68 | 0.570054 |
Target: 5'- -gCGAgcGgGUGCGAAgcccgcauuGUGCGGCACCAu -3' miRNA: 3'- gaGCUa-CgCGUGCUU---------CACGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 5119 | 0.68 | 0.579726 |
Target: 5'- -aCGAUGCcugccauGCGCGAcGgGCGGCGCUg -3' miRNA: 3'- gaGCUACG-------CGUGCUuCaCGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 49831 | 0.68 | 0.568981 |
Target: 5'- -gCGAUggaGCGCGCGAauggcccggugccGGcgGCGGUACCGg -3' miRNA: 3'- gaGCUA---CGCGUGCU-------------UCa-CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 14166 | 0.68 | 0.559354 |
Target: 5'- -cCGccGCGCcgaGGAGUGCGGCaaGCCGc -3' miRNA: 3'- gaGCuaCGCGug-CUUCACGCCG--UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 30505 | 0.68 | 0.591594 |
Target: 5'- uUCGGcgcccggcgUGCGCGCGA--UGCGGUACg- -3' miRNA: 3'- gAGCU---------ACGCGUGCUucACGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 43878 | 0.68 | 0.558287 |
Target: 5'- -gCGAUcGCGCGCauggccgacauGAAGUcgaaggcgucagcGCGGCGCCAa -3' miRNA: 3'- gaGCUA-CGCGUG-----------CUUCA-------------CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 47081 | 0.68 | 0.580803 |
Target: 5'- -cCGGUGCGCACaGggGUauCGaGCACCu -3' miRNA: 3'- gaGCUACGCGUG-CuuCAc-GC-CGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 6082 | 0.68 | 0.570054 |
Target: 5'- -aUGcgGCGCGCGucGUgGCGGCcuACCGa -3' miRNA: 3'- gaGCuaCGCGUGCuuCA-CGCCG--UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 51421 | 0.68 | 0.570054 |
Target: 5'- gCUCGGcggcGCGCGCGAGG-GCGaUACCGu -3' miRNA: 3'- -GAGCUa---CGCGUGCUUCaCGCcGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 45692 | 0.67 | 0.65673 |
Target: 5'- uUCG-UGCGCAuCGAGG-GCcGGCAgCCGg -3' miRNA: 3'- gAGCuACGCGU-GCUUCaCG-CCGU-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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