miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 18113 1.08 0.001029
Target:  5'- cCUCGAUGCGCACGAAGUGCGGCACCAu -3'
miRNA:   3'- -GAGCUACGCGUGCUUCACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 34577 0.81 0.090398
Target:  5'- gUCG-UGUGCGCGccGUGCGGCGCCGu -3'
miRNA:   3'- gAGCuACGCGUGCuuCACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 28128 0.78 0.144948
Target:  5'- gCUCGAcgUGaGCACGAGcUGCGGCACCGa -3'
miRNA:   3'- -GAGCU--ACgCGUGCUUcACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 51837 0.76 0.189772
Target:  5'- -cCGAcGUGCGCGAAGUgcugaagcGCGGCGCCGc -3'
miRNA:   3'- gaGCUaCGCGUGCUUCA--------CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 22381 0.74 0.259198
Target:  5'- gUCGgcGCaUACGAGGUGcCGGCGCCGa -3'
miRNA:   3'- gAGCuaCGcGUGCUUCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 63248 0.73 0.31617
Target:  5'- -gCGGUcGCGCACGAAGUGuCaGCACUg -3'
miRNA:   3'- gaGCUA-CGCGUGCUUCAC-GcCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 29770 0.73 0.323921
Target:  5'- aUCGAcgcgGCGCACGA--UGCGGC-CCGg -3'
miRNA:   3'- gAGCUa---CGCGUGCUucACGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 46898 0.73 0.323921
Target:  5'- -gCGGUGCGgGCGGugcgguguGGUGCGGC-CCGg -3'
miRNA:   3'- gaGCUACGCgUGCU--------UCACGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 34739 0.72 0.348017
Target:  5'- gUCGAgccgaacacgGUGCGCGucGUGcCGGCGCCGc -3'
miRNA:   3'- gAGCUa---------CGCGUGCuuCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60401 0.72 0.373367
Target:  5'- uCUCGAUGUaccuggacggGCACGggGcgcauagcaucgUGCGGCAUCu -3'
miRNA:   3'- -GAGCUACG----------CGUGCuuC------------ACGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 2396 0.71 0.417384
Target:  5'- uUCGccucGCGCGCGAGGUcguaguaGCGGCugCGc -3'
miRNA:   3'- gAGCua--CGCGUGCUUCA-------CGCCGugGU- -5'
23946 3' -56.2 NC_005262.1 + 15899 0.7 0.456551
Target:  5'- -cCGcGUGCGCGCGAc--GUGGCGCCGc -3'
miRNA:   3'- gaGC-UACGCGUGCUucaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52354 0.7 0.456551
Target:  5'- -aCGAUGCGCgggcGCGgcGUGuCGcGCACCu -3'
miRNA:   3'- gaGCUACGCG----UGCuuCAC-GC-CGUGGu -5'
23946 3' -56.2 NC_005262.1 + 61403 0.7 0.456551
Target:  5'- -aCGAccucGCGCGCGAGGcgaagGCGGCgGCCGa -3'
miRNA:   3'- gaGCUa---CGCGUGCUUCa----CGCCG-UGGU- -5'
23946 3' -56.2 NC_005262.1 + 11147 0.7 0.466402
Target:  5'- -aCGAUGCGCACGuucugcucUGCGGUcgcgcGCCAc -3'
miRNA:   3'- gaGCUACGCGUGCuuc-----ACGCCG-----UGGU- -5'
23946 3' -56.2 NC_005262.1 + 54047 0.7 0.466402
Target:  5'- aUCGA-GCGCACGGGcgacGaCGGCACCGu -3'
miRNA:   3'- gAGCUaCGCGUGCUUca--C-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 11928 0.7 0.476361
Target:  5'- gCUCGGUcGUGCucGCGucGUucGCGGCGCCGc -3'
miRNA:   3'- -GAGCUA-CGCG--UGCuuCA--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 4651 0.69 0.486425
Target:  5'- cCUCcAUGCGCGCGgcGacGCGGC-CCGg -3'
miRNA:   3'- -GAGcUACGCGUGCuuCa-CGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 46133 0.69 0.506846
Target:  5'- -cCGAgGCGUAUGAGGaguaccaGCGGCGCCu -3'
miRNA:   3'- gaGCUaCGCGUGCUUCa------CGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 17545 0.69 0.506846
Target:  5'- -gCGGUcGCGCGCGAg--GCGGCAgCCGc -3'
miRNA:   3'- gaGCUA-CGCGUGCUucaCGCCGU-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.