Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23946 | 3' | -56.2 | NC_005262.1 | + | 32023 | 0.67 | 0.624132 |
Target: 5'- -aCGAUcGCGCGCGA--UGCGGCggauguuguggACCGu -3' miRNA: 3'- gaGCUA-CGCGUGCUucACGCCG-----------UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 52594 | 0.67 | 0.624132 |
Target: 5'- uCUCGAUcuugcagguggcGCGCACGAucacgGCGGCGUCGu -3' miRNA: 3'- -GAGCUA------------CGCGUGCUuca--CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 17569 | 0.67 | 0.62848 |
Target: 5'- -gCGGcgGCGCGCGAAGccgaggagaagcugGCGGCGCa- -3' miRNA: 3'- gaGCUa-CGCGUGCUUCa-------------CGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 52109 | 0.67 | 0.62848 |
Target: 5'- cCUCGGuuccgaaguUGCGCGCGAAgcucugccggccagcGUGCagcgcgacgccGGCGCCGc -3' miRNA: 3'- -GAGCU---------ACGCGUGCUU---------------CACG-----------CCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 36470 | 0.67 | 0.635004 |
Target: 5'- aUgGgcGCGCGCGAGGcugGCGGaCAUCGc -3' miRNA: 3'- gAgCuaCGCGUGCUUCa--CGCC-GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 47895 | 0.67 | 0.642613 |
Target: 5'- aUCGcgGCGCACGucGcGCGcacgcggcggaucaGCGCCAu -3' miRNA: 3'- gAGCuaCGCGUGCuuCaCGC--------------CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 61302 | 0.67 | 0.645873 |
Target: 5'- aUCGGguUGCuGCugGucgccAAGcGCGGCACCAc -3' miRNA: 3'- gAGCU--ACG-CGugC-----UUCaCGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 13496 | 0.67 | 0.65673 |
Target: 5'- aCUCGcugGCGaagGCGAAGgcgGCGGCAUgAg -3' miRNA: 3'- -GAGCua-CGCg--UGCUUCa--CGCCGUGgU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 45692 | 0.67 | 0.65673 |
Target: 5'- uUCG-UGCGCAuCGAGG-GCcGGCAgCCGg -3' miRNA: 3'- gAGCuACGCGU-GCUUCaCG-CCGU-GGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60371 | 0.67 | 0.65673 |
Target: 5'- -cCGA-GCGCGCuGAAGcgaUGCGGCucGCCg -3' miRNA: 3'- gaGCUaCGCGUG-CUUC---ACGCCG--UGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 17126 | 0.67 | 0.65673 |
Target: 5'- aUCG--GCGgGCGucGGUGcCGGCGCCAu -3' miRNA: 3'- gAGCuaCGCgUGCu-UCAC-GCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 41424 | 0.66 | 0.666483 |
Target: 5'- cCUCGuAUGCGC-CGAcuaacacGG-GCGGCGCg- -3' miRNA: 3'- -GAGC-UACGCGuGCU-------UCaCGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 6096 | 0.66 | 0.667565 |
Target: 5'- uCUCGGUGaucCGCACGuugcGGaacgGCGGCACa- -3' miRNA: 3'- -GAGCUAC---GCGUGCu---UCa---CGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 57544 | 0.66 | 0.67621 |
Target: 5'- aUCGAggcggcaaagaccgUGCGCGCGgcGggcuucagcaucucgGCGGgCACCAa -3' miRNA: 3'- gAGCU--------------ACGCGUGCuuCa--------------CGCC-GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 14043 | 0.66 | 0.678367 |
Target: 5'- cCUCGGgcgcggGCGCcgccgGCGucGGUGCGGCuucgGCCGc -3' miRNA: 3'- -GAGCUa-----CGCG-----UGCu-UCACGCCG----UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 21235 | 0.66 | 0.678367 |
Target: 5'- gUCGAccUGaacgGCACGAAG-GCGGCGauCCGa -3' miRNA: 3'- gAGCU--ACg---CGUGCUUCaCGCCGU--GGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 33136 | 0.66 | 0.689127 |
Target: 5'- aUCGAaugcauucUGCGU-CGuAAGgGCGGCACCGu -3' miRNA: 3'- gAGCU--------ACGCGuGC-UUCaCGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 62028 | 0.66 | 0.693416 |
Target: 5'- aUCGccGCGCGCGAuccuccuccucgaUGCGGCGCa- -3' miRNA: 3'- gAGCuaCGCGUGCUuc-----------ACGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 11372 | 0.66 | 0.699833 |
Target: 5'- -aCGAUgaaGCGCACGAcGUucgcgcGCGGCuCCAc -3' miRNA: 3'- gaGCUA---CGCGUGCUuCA------CGCCGuGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60624 | 0.66 | 0.699833 |
Target: 5'- -aCGccAUGCGCACGcuggcGAGcgGCGaGCACCGc -3' miRNA: 3'- gaGC--UACGCGUGC-----UUCa-CGC-CGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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