miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 41424 0.66 0.666483
Target:  5'- cCUCGuAUGCGC-CGAcuaacacGG-GCGGCGCg- -3'
miRNA:   3'- -GAGC-UACGCGuGCU-------UCaCGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 45692 0.67 0.65673
Target:  5'- uUCG-UGCGCAuCGAGG-GCcGGCAgCCGg -3'
miRNA:   3'- gAGCuACGCGU-GCUUCaCG-CCGU-GGU- -5'
23946 3' -56.2 NC_005262.1 + 13496 0.67 0.65673
Target:  5'- aCUCGcugGCGaagGCGAAGgcgGCGGCAUgAg -3'
miRNA:   3'- -GAGCua-CGCg--UGCUUCa--CGCCGUGgU- -5'
23946 3' -56.2 NC_005262.1 + 60371 0.67 0.65673
Target:  5'- -cCGA-GCGCGCuGAAGcgaUGCGGCucGCCg -3'
miRNA:   3'- gaGCUaCGCGUG-CUUC---ACGCCG--UGGu -5'
23946 3' -56.2 NC_005262.1 + 17126 0.67 0.65673
Target:  5'- aUCG--GCGgGCGucGGUGcCGGCGCCAu -3'
miRNA:   3'- gAGCuaCGCgUGCu-UCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 61302 0.67 0.645873
Target:  5'- aUCGGguUGCuGCugGucgccAAGcGCGGCACCAc -3'
miRNA:   3'- gAGCU--ACG-CGugC-----UUCaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 47895 0.67 0.642613
Target:  5'- aUCGcgGCGCACGucGcGCGcacgcggcggaucaGCGCCAu -3'
miRNA:   3'- gAGCuaCGCGUGCuuCaCGC--------------CGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 36470 0.67 0.635004
Target:  5'- aUgGgcGCGCGCGAGGcugGCGGaCAUCGc -3'
miRNA:   3'- gAgCuaCGCGUGCUUCa--CGCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52109 0.67 0.62848
Target:  5'- cCUCGGuuccgaaguUGCGCGCGAAgcucugccggccagcGUGCagcgcgacgccGGCGCCGc -3'
miRNA:   3'- -GAGCU---------ACGCGUGCUU---------------CACG-----------CCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 17569 0.67 0.62848
Target:  5'- -gCGGcgGCGCGCGAAGccgaggagaagcugGCGGCGCa- -3'
miRNA:   3'- gaGCUa-CGCGUGCUUCa-------------CGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 52594 0.67 0.624132
Target:  5'- uCUCGAUcuugcagguggcGCGCACGAucacgGCGGCGUCGu -3'
miRNA:   3'- -GAGCUA------------CGCGUGCUuca--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 32023 0.67 0.624132
Target:  5'- -aCGAUcGCGCGCGA--UGCGGCggauguuguggACCGu -3'
miRNA:   3'- gaGCUA-CGCGUGCUucACGCCG-----------UGGU- -5'
23946 3' -56.2 NC_005262.1 + 15464 0.67 0.602418
Target:  5'- aUCGAUGUGCGaGAAGcaCGGCGCUu -3'
miRNA:   3'- gAGCUACGCGUgCUUCacGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 8661 0.68 0.59592
Target:  5'- gCUCGAggaauucGCGUGCGAacugcgcgagcauguGGUuCGGCACCAc -3'
miRNA:   3'- -GAGCUa------CGCGUGCU---------------UCAcGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 56764 0.68 0.591594
Target:  5'- -gCGAUGCGCGCGAAGgaccUGaCGucCACCGa -3'
miRNA:   3'- gaGCUACGCGUGCUUC----AC-GCc-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60213 0.68 0.591594
Target:  5'- -cCGG-GCGCACGAGGaauCGGaCACCAa -3'
miRNA:   3'- gaGCUaCGCGUGCUUCac-GCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 30505 0.68 0.591594
Target:  5'- uUCGGcgcccggcgUGCGCGCGA--UGCGGUACg- -3'
miRNA:   3'- gAGCU---------ACGCGUGCUucACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 47081 0.68 0.580803
Target:  5'- -cCGGUGCGCACaGggGUauCGaGCACCu -3'
miRNA:   3'- gaGCUACGCGUG-CuuCAc-GC-CGUGGu -5'
23946 3' -56.2 NC_005262.1 + 5119 0.68 0.579726
Target:  5'- -aCGAUGCcugccauGCGCGAcGgGCGGCGCUg -3'
miRNA:   3'- gaGCUACG-------CGUGCUuCaCGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 32856 0.68 0.570054
Target:  5'- uUCGGccCGCACG---UGCGGCGCCGa -3'
miRNA:   3'- gAGCUacGCGUGCuucACGCCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.