Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23946 | 3' | -56.2 | NC_005262.1 | + | 61403 | 0.7 | 0.456551 |
Target: 5'- -aCGAccucGCGCGCGAGGcgaagGCGGCgGCCGa -3' miRNA: 3'- gaGCUa---CGCGUGCUUCa----CGCCG-UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 2396 | 0.71 | 0.417384 |
Target: 5'- uUCGccucGCGCGCGAGGUcguaguaGCGGCugCGc -3' miRNA: 3'- gAGCua--CGCGUGCUUCA-------CGCCGugGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60401 | 0.72 | 0.373367 |
Target: 5'- uCUCGAUGUaccuggacggGCACGggGcgcauagcaucgUGCGGCAUCu -3' miRNA: 3'- -GAGCUACG----------CGUGCuuC------------ACGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 34739 | 0.72 | 0.348017 |
Target: 5'- gUCGAgccgaacacgGUGCGCGucGUGcCGGCGCCGc -3' miRNA: 3'- gAGCUa---------CGCGUGCuuCAC-GCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 46898 | 0.73 | 0.323921 |
Target: 5'- -gCGGUGCGgGCGGugcgguguGGUGCGGC-CCGg -3' miRNA: 3'- gaGCUACGCgUGCU--------UCACGCCGuGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 29770 | 0.73 | 0.323921 |
Target: 5'- aUCGAcgcgGCGCACGA--UGCGGC-CCGg -3' miRNA: 3'- gAGCUa---CGCGUGCUucACGCCGuGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 63248 | 0.73 | 0.31617 |
Target: 5'- -gCGGUcGCGCACGAAGUGuCaGCACUg -3' miRNA: 3'- gaGCUA-CGCGUGCUUCAC-GcCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 22381 | 0.74 | 0.259198 |
Target: 5'- gUCGgcGCaUACGAGGUGcCGGCGCCGa -3' miRNA: 3'- gAGCuaCGcGUGCUUCAC-GCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 51837 | 0.76 | 0.189772 |
Target: 5'- -cCGAcGUGCGCGAAGUgcugaagcGCGGCGCCGc -3' miRNA: 3'- gaGCUaCGCGUGCUUCA--------CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 28128 | 0.78 | 0.144948 |
Target: 5'- gCUCGAcgUGaGCACGAGcUGCGGCACCGa -3' miRNA: 3'- -GAGCU--ACgCGUGCUUcACGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 34577 | 0.81 | 0.090398 |
Target: 5'- gUCG-UGUGCGCGccGUGCGGCGCCGu -3' miRNA: 3'- gAGCuACGCGUGCuuCACGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 18113 | 1.08 | 0.001029 |
Target: 5'- cCUCGAUGCGCACGAAGUGCGGCACCAu -3' miRNA: 3'- -GAGCUACGCGUGCUUCACGCCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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