miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 1445 0.66 0.710475
Target:  5'- uUCGAcgGUGUAgGGcugcauGGUGCGGCACa- -3'
miRNA:   3'- gAGCUa-CGCGUgCU------UCACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 2396 0.71 0.417384
Target:  5'- uUCGccucGCGCGCGAGGUcguaguaGCGGCugCGc -3'
miRNA:   3'- gAGCua--CGCGUGCUUCA-------CGCCGugGU- -5'
23946 3' -56.2 NC_005262.1 + 4551 0.66 0.709414
Target:  5'- aUCGugcGCGCGCGGcgcaucucgcgccAGcgGCGGCGCUg -3'
miRNA:   3'- gAGCua-CGCGUGCU-------------UCa-CGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 4651 0.69 0.486425
Target:  5'- cCUCcAUGCGCGCGgcGacGCGGC-CCGg -3'
miRNA:   3'- -GAGcUACGCGUGCuuCa-CGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 5119 0.68 0.579726
Target:  5'- -aCGAUGCcugccauGCGCGAcGgGCGGCGCUg -3'
miRNA:   3'- gaGCUACG-------CGUGCUuCaCGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 6082 0.68 0.570054
Target:  5'- -aUGcgGCGCGCGucGUgGCGGCcuACCGa -3'
miRNA:   3'- gaGCuaCGCGUGCuuCA-CGCCG--UGGU- -5'
23946 3' -56.2 NC_005262.1 + 6096 0.66 0.667565
Target:  5'- uCUCGGUGaucCGCACGuugcGGaacgGCGGCACa- -3'
miRNA:   3'- -GAGCUAC---GCGUGCu---UCa---CGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 7782 0.69 0.527624
Target:  5'- -gCGAgcccGCGCAUGGAGagcuUGCGGCucuCCAu -3'
miRNA:   3'- gaGCUa---CGCGUGCUUC----ACGCCGu--GGU- -5'
23946 3' -56.2 NC_005262.1 + 8661 0.68 0.59592
Target:  5'- gCUCGAggaauucGCGUGCGAacugcgcgagcauguGGUuCGGCACCAc -3'
miRNA:   3'- -GAGCUa------CGCGUGCU---------------UCAcGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 9434 0.68 0.570054
Target:  5'- -gCGAgcGgGUGCGAAgcccgcauuGUGCGGCACCAu -3'
miRNA:   3'- gaGCUa-CgCGUGCUU---------CACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 11147 0.7 0.466402
Target:  5'- -aCGAUGCGCACGuucugcucUGCGGUcgcgcGCCAc -3'
miRNA:   3'- gaGCUACGCGUGCuuc-----ACGCCG-----UGGU- -5'
23946 3' -56.2 NC_005262.1 + 11372 0.66 0.699833
Target:  5'- -aCGAUgaaGCGCACGAcGUucgcgcGCGGCuCCAc -3'
miRNA:   3'- gaGCUA---CGCGUGCUuCA------CGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 11928 0.7 0.476361
Target:  5'- gCUCGGUcGUGCucGCGucGUucGCGGCGCCGc -3'
miRNA:   3'- -GAGCUA-CGCG--UGCuuCA--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 13041 0.69 0.537078
Target:  5'- -gCGGUGCGCGuCGAGcUGCGGCcgauuguggcuugACCGg -3'
miRNA:   3'- gaGCUACGCGU-GCUUcACGCCG-------------UGGU- -5'
23946 3' -56.2 NC_005262.1 + 13146 0.66 0.721042
Target:  5'- -cCGccGCGCGCGcuGcGCGGCACa- -3'
miRNA:   3'- gaGCuaCGCGUGCuuCaCGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 13234 0.66 0.704098
Target:  5'- gCUCGGgcUGCGguUGAacgGGUGCGcgagccugcucaucaGCACCAg -3'
miRNA:   3'- -GAGCU--ACGCguGCU---UCACGC---------------CGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 13496 0.67 0.65673
Target:  5'- aCUCGcugGCGaagGCGAAGgcgGCGGCAUgAg -3'
miRNA:   3'- -GAGCua-CGCg--UGCUUCa--CGCCGUGgU- -5'
23946 3' -56.2 NC_005262.1 + 14043 0.66 0.678367
Target:  5'- cCUCGGgcgcggGCGCcgccgGCGucGGUGCGGCuucgGCCGc -3'
miRNA:   3'- -GAGCUa-----CGCG-----UGCu-UCACGCCG----UGGU- -5'
23946 3' -56.2 NC_005262.1 + 14166 0.68 0.559354
Target:  5'- -cCGccGCGCcgaGGAGUGCGGCaaGCCGc -3'
miRNA:   3'- gaGCuaCGCGug-CUUCACGCCG--UGGU- -5'
23946 3' -56.2 NC_005262.1 + 15464 0.67 0.602418
Target:  5'- aUCGAUGUGCGaGAAGcaCGGCGCUu -3'
miRNA:   3'- gAGCUACGCGUgCUUCacGCCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.