miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 15899 0.7 0.456551
Target:  5'- -cCGcGUGCGCGCGAc--GUGGCGCCGc -3'
miRNA:   3'- gaGC-UACGCGUGCUucaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 17126 0.67 0.65673
Target:  5'- aUCG--GCGgGCGucGGUGcCGGCGCCAu -3'
miRNA:   3'- gAGCuaCGCgUGCu-UCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 17545 0.69 0.506846
Target:  5'- -gCGGUcGCGCGCGAg--GCGGCAgCCGc -3'
miRNA:   3'- gaGCUA-CGCGUGCUucaCGCCGU-GGU- -5'
23946 3' -56.2 NC_005262.1 + 17569 0.67 0.62848
Target:  5'- -gCGGcgGCGCGCGAAGccgaggagaagcugGCGGCGCa- -3'
miRNA:   3'- gaGCUa-CGCGUGCUUCa-------------CGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 18113 1.08 0.001029
Target:  5'- cCUCGAUGCGCACGAAGUGCGGCACCAu -3'
miRNA:   3'- -GAGCUACGCGUGCUUCACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 18671 0.69 0.517193
Target:  5'- -aCGuucugGCGCGCGguGUucGCGGCACCc -3'
miRNA:   3'- gaGCua---CGCGUGCuuCA--CGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 21235 0.66 0.678367
Target:  5'- gUCGAccUGaacgGCACGAAG-GCGGCGauCCGa -3'
miRNA:   3'- gAGCU--ACg---CGUGCUUCaCGCCGU--GGU- -5'
23946 3' -56.2 NC_005262.1 + 22381 0.74 0.259198
Target:  5'- gUCGgcGCaUACGAGGUGcCGGCGCCGa -3'
miRNA:   3'- gAGCuaCGcGUGCUUCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 27054 0.66 0.721042
Target:  5'- aUCGucGUGCGCA-GAAcugcgcccGCGGCGCCAg -3'
miRNA:   3'- gAGC--UACGCGUgCUUca------CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 27930 0.66 0.714712
Target:  5'- --aGGUGCGCGCGucgcgcGcacaaacaucugggcGGUcGCGGCGCCGa -3'
miRNA:   3'- gagCUACGCGUGC------U---------------UCA-CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 28128 0.78 0.144948
Target:  5'- gCUCGAcgUGaGCACGAGcUGCGGCACCGa -3'
miRNA:   3'- -GAGCU--ACgCGUGCUUcACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 29770 0.73 0.323921
Target:  5'- aUCGAcgcgGCGCACGA--UGCGGC-CCGg -3'
miRNA:   3'- gAGCUa---CGCGUGCUucACGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 30505 0.68 0.591594
Target:  5'- uUCGGcgcccggcgUGCGCGCGA--UGCGGUACg- -3'
miRNA:   3'- gAGCU---------ACGCGUGCUucACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 30722 0.66 0.714712
Target:  5'- -cCGAaGCGCACGAGGagaagcugaugaagaUGuCGGcCGCCGa -3'
miRNA:   3'- gaGCUaCGCGUGCUUC---------------AC-GCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 32023 0.67 0.624132
Target:  5'- -aCGAUcGCGCGCGA--UGCGGCggauguuguggACCGu -3'
miRNA:   3'- gaGCUA-CGCGUGCUucACGCCG-----------UGGU- -5'
23946 3' -56.2 NC_005262.1 + 32856 0.68 0.570054
Target:  5'- uUCGGccCGCACG---UGCGGCGCCGa -3'
miRNA:   3'- gAGCUacGCGUGCuucACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 33136 0.66 0.689127
Target:  5'- aUCGAaugcauucUGCGU-CGuAAGgGCGGCACCGu -3'
miRNA:   3'- gAGCU--------ACGCGuGC-UUCaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 34577 0.81 0.090398
Target:  5'- gUCG-UGUGCGCGccGUGCGGCGCCGu -3'
miRNA:   3'- gAGCuACGCGUGCuuCACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 34739 0.72 0.348017
Target:  5'- gUCGAgccgaacacgGUGCGCGucGUGcCGGCGCCGc -3'
miRNA:   3'- gAGCUa---------CGCGUGCuuCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 36470 0.67 0.635004
Target:  5'- aUgGgcGCGCGCGAGGcugGCGGaCAUCGc -3'
miRNA:   3'- gAgCuaCGCGUGCUUCa--CGCC-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.