miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 63592 0.66 0.721042
Target:  5'- gCUCG-UGCGCGCGc--UGCGGaucguCACCGg -3'
miRNA:   3'- -GAGCuACGCGUGCuucACGCC-----GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 63248 0.73 0.31617
Target:  5'- -gCGGUcGCGCACGAAGUGuCaGCACUg -3'
miRNA:   3'- gaGCUA-CGCGUGCUUCAC-GcCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 62028 0.66 0.693416
Target:  5'- aUCGccGCGCGCGAuccuccuccucgaUGCGGCGCa- -3'
miRNA:   3'- gAGCuaCGCGUGCUuc-----------ACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 61638 0.66 0.710475
Target:  5'- gCUCGAggGCGaggAgGAAGUGCuGUACCGc -3'
miRNA:   3'- -GAGCUa-CGCg--UgCUUCACGcCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 61403 0.7 0.456551
Target:  5'- -aCGAccucGCGCGCGAGGcgaagGCGGCgGCCGa -3'
miRNA:   3'- gaGCUa---CGCGUGCUUCa----CGCCG-UGGU- -5'
23946 3' -56.2 NC_005262.1 + 61302 0.67 0.645873
Target:  5'- aUCGGguUGCuGCugGucgccAAGcGCGGCACCAc -3'
miRNA:   3'- gAGCU--ACG-CGugC-----UUCaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60624 0.66 0.699833
Target:  5'- -aCGccAUGCGCACGcuggcGAGcgGCGaGCACCGc -3'
miRNA:   3'- gaGC--UACGCGUGC-----UUCa-CGC-CGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60620 0.69 0.527624
Target:  5'- --aGAUGCGCGCGAuuGGcgaccUGCGcauGCGCCAg -3'
miRNA:   3'- gagCUACGCGUGCU--UC-----ACGC---CGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60401 0.72 0.373367
Target:  5'- uCUCGAUGUaccuggacggGCACGggGcgcauagcaucgUGCGGCAUCu -3'
miRNA:   3'- -GAGCUACG----------CGUGCuuC------------ACGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 60371 0.67 0.65673
Target:  5'- -cCGA-GCGCGCuGAAGcgaUGCGGCucGCCg -3'
miRNA:   3'- gaGCUaCGCGUG-CUUC---ACGCCG--UGGu -5'
23946 3' -56.2 NC_005262.1 + 60213 0.68 0.591594
Target:  5'- -cCGG-GCGCACGAGGaauCGGaCACCAa -3'
miRNA:   3'- gaGCUaCGCGUGCUUCac-GCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 57544 0.66 0.67621
Target:  5'- aUCGAggcggcaaagaccgUGCGCGCGgcGggcuucagcaucucgGCGGgCACCAa -3'
miRNA:   3'- gAGCU--------------ACGCGUGCuuCa--------------CGCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 56887 0.69 0.538132
Target:  5'- -aCGA-GCGgAUGAAGUGgGGCACgCGg -3'
miRNA:   3'- gaGCUaCGCgUGCUUCACgCCGUG-GU- -5'
23946 3' -56.2 NC_005262.1 + 56764 0.68 0.591594
Target:  5'- -gCGAUGCGCGCGAAGgaccUGaCGucCACCGa -3'
miRNA:   3'- gaGCUACGCGUGCUUC----AC-GCc-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 56095 0.66 0.721042
Target:  5'- --aGAUGCaGCuCGAGGagGCGGCGCa- -3'
miRNA:   3'- gagCUACG-CGuGCUUCa-CGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 54047 0.7 0.466402
Target:  5'- aUCGA-GCGCACGGGcgacGaCGGCACCGu -3'
miRNA:   3'- gAGCUaCGCGUGCUUca--C-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52594 0.67 0.624132
Target:  5'- uCUCGAUcuugcagguggcGCGCACGAucacgGCGGCGUCGu -3'
miRNA:   3'- -GAGCUA------------CGCGUGCUuca--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52354 0.7 0.456551
Target:  5'- -aCGAUGCGCgggcGCGgcGUGuCGcGCACCu -3'
miRNA:   3'- gaGCUACGCG----UGCuuCAC-GC-CGUGGu -5'
23946 3' -56.2 NC_005262.1 + 52109 0.67 0.62848
Target:  5'- cCUCGGuuccgaaguUGCGCGCGAAgcucugccggccagcGUGCagcgcgacgccGGCGCCGc -3'
miRNA:   3'- -GAGCU---------ACGCGUGCUU---------------CACG-----------CCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 51837 0.76 0.189772
Target:  5'- -cCGAcGUGCGCGAAGUgcugaagcGCGGCGCCGc -3'
miRNA:   3'- gaGCUaCGCGUGCUUCA--------CGCCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.