miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 51421 0.68 0.570054
Target:  5'- gCUCGGcggcGCGCGCGAGG-GCGaUACCGu -3'
miRNA:   3'- -GAGCUa---CGCGUGCUUCaCGCcGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 50915 0.69 0.537078
Target:  5'- -cUGAUGCGCACGAGcgucaccGUGCacGGCAgCGc -3'
miRNA:   3'- gaGCUACGCGUGCUU-------CACG--CCGUgGU- -5'
23946 3' -56.2 NC_005262.1 + 49831 0.68 0.568981
Target:  5'- -gCGAUggaGCGCGCGAauggcccggugccGGcgGCGGUACCGg -3'
miRNA:   3'- gaGCUA---CGCGUGCU-------------UCa-CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 47895 0.67 0.642613
Target:  5'- aUCGcgGCGCACGucGcGCGcacgcggcggaucaGCGCCAu -3'
miRNA:   3'- gAGCuaCGCGUGCuuCaCGC--------------CGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 47081 0.68 0.580803
Target:  5'- -cCGGUGCGCACaGggGUauCGaGCACCu -3'
miRNA:   3'- gaGCUACGCGUG-CuuCAc-GC-CGUGGu -5'
23946 3' -56.2 NC_005262.1 + 46898 0.73 0.323921
Target:  5'- -gCGGUGCGgGCGGugcgguguGGUGCGGC-CCGg -3'
miRNA:   3'- gaGCUACGCgUGCU--------UCACGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 46133 0.69 0.506846
Target:  5'- -cCGAgGCGUAUGAGGaguaccaGCGGCGCCu -3'
miRNA:   3'- gaGCUaCGCGUGCUUCa------CGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 45692 0.67 0.65673
Target:  5'- uUCG-UGCGCAuCGAGG-GCcGGCAgCCGg -3'
miRNA:   3'- gAGCuACGCGU-GCUUCaCG-CCGU-GGU- -5'
23946 3' -56.2 NC_005262.1 + 44708 0.66 0.721042
Target:  5'- aUCGccGCGCGCGAGGaaaUGCaGCucgGCCGc -3'
miRNA:   3'- gAGCuaCGCGUGCUUC---ACGcCG---UGGU- -5'
23946 3' -56.2 NC_005262.1 + 43878 0.68 0.558287
Target:  5'- -gCGAUcGCGCGCauggccgacauGAAGUcgaaggcgucagcGCGGCGCCAa -3'
miRNA:   3'- gaGCUA-CGCGUG-----------CUUCA-------------CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 42300 0.66 0.709414
Target:  5'- gCUCGGUGCGCcacugguacgcAUGGccgaugccccagcAGUaGCGGCACgCAa -3'
miRNA:   3'- -GAGCUACGCG-----------UGCU-------------UCA-CGCCGUG-GU- -5'
23946 3' -56.2 NC_005262.1 + 41424 0.66 0.666483
Target:  5'- cCUCGuAUGCGC-CGAcuaacacGG-GCGGCGCg- -3'
miRNA:   3'- -GAGC-UACGCGuGCU-------UCaCGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 36470 0.67 0.635004
Target:  5'- aUgGgcGCGCGCGAGGcugGCGGaCAUCGc -3'
miRNA:   3'- gAgCuaCGCGUGCUUCa--CGCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 34739 0.72 0.348017
Target:  5'- gUCGAgccgaacacgGUGCGCGucGUGcCGGCGCCGc -3'
miRNA:   3'- gAGCUa---------CGCGUGCuuCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 34577 0.81 0.090398
Target:  5'- gUCG-UGUGCGCGccGUGCGGCGCCGu -3'
miRNA:   3'- gAGCuACGCGUGCuuCACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 33136 0.66 0.689127
Target:  5'- aUCGAaugcauucUGCGU-CGuAAGgGCGGCACCGu -3'
miRNA:   3'- gAGCU--------ACGCGuGC-UUCaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 32856 0.68 0.570054
Target:  5'- uUCGGccCGCACG---UGCGGCGCCGa -3'
miRNA:   3'- gAGCUacGCGUGCuucACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 32023 0.67 0.624132
Target:  5'- -aCGAUcGCGCGCGA--UGCGGCggauguuguggACCGu -3'
miRNA:   3'- gaGCUA-CGCGUGCUucACGCCG-----------UGGU- -5'
23946 3' -56.2 NC_005262.1 + 30722 0.66 0.714712
Target:  5'- -cCGAaGCGCACGAGGagaagcugaugaagaUGuCGGcCGCCGa -3'
miRNA:   3'- gaGCUaCGCGUGCUUC---------------AC-GCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 30505 0.68 0.591594
Target:  5'- uUCGGcgcccggcgUGCGCGCGA--UGCGGUACg- -3'
miRNA:   3'- gAGCU---------ACGCGUGCUucACGCCGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.