miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 13496 0.67 0.65673
Target:  5'- aCUCGcugGCGaagGCGAAGgcgGCGGCAUgAg -3'
miRNA:   3'- -GAGCua-CGCg--UGCUUCa--CGCCGUGgU- -5'
23946 3' -56.2 NC_005262.1 + 49831 0.68 0.568981
Target:  5'- -gCGAUggaGCGCGCGAauggcccggugccGGcgGCGGUACCGg -3'
miRNA:   3'- gaGCUA---CGCGUGCU-------------UCa-CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 9434 0.68 0.570054
Target:  5'- -gCGAgcGgGUGCGAAgcccgcauuGUGCGGCACCAu -3'
miRNA:   3'- gaGCUa-CgCGUGCUU---------CACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 32856 0.68 0.570054
Target:  5'- uUCGGccCGCACG---UGCGGCGCCGa -3'
miRNA:   3'- gAGCUacGCGUGCuucACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 51421 0.68 0.570054
Target:  5'- gCUCGGcggcGCGCGCGAGG-GCGaUACCGu -3'
miRNA:   3'- -GAGCUa---CGCGUGCUUCaCGCcGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 5119 0.68 0.579726
Target:  5'- -aCGAUGCcugccauGCGCGAcGgGCGGCGCUg -3'
miRNA:   3'- gaGCUACG-------CGUGCUuCaCGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 15464 0.67 0.602418
Target:  5'- aUCGAUGUGCGaGAAGcaCGGCGCUu -3'
miRNA:   3'- gAGCUACGCGUgCUUCacGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 17569 0.67 0.62848
Target:  5'- -gCGGcgGCGCGCGAAGccgaggagaagcugGCGGCGCa- -3'
miRNA:   3'- gaGCUa-CGCGUGCUUCa-------------CGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 36470 0.67 0.635004
Target:  5'- aUgGgcGCGCGCGAGGcugGCGGaCAUCGc -3'
miRNA:   3'- gAgCuaCGCGUGCUUCa--CGCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 14166 0.68 0.559354
Target:  5'- -cCGccGCGCcgaGGAGUGCGGCaaGCCGc -3'
miRNA:   3'- gaGCuaCGCGug-CUUCACGCCG--UGGU- -5'
23946 3' -56.2 NC_005262.1 + 43878 0.68 0.558287
Target:  5'- -gCGAUcGCGCGCauggccgacauGAAGUcgaaggcgucagcGCGGCGCCAa -3'
miRNA:   3'- gaGCUA-CGCGUG-----------CUUCA-------------CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 13041 0.69 0.537078
Target:  5'- -gCGGUGCGCGuCGAGcUGCGGCcgauuguggcuugACCGg -3'
miRNA:   3'- gaGCUACGCGU-GCUUcACGCCG-------------UGGU- -5'
23946 3' -56.2 NC_005262.1 + 51837 0.76 0.189772
Target:  5'- -cCGAcGUGCGCGAAGUgcugaagcGCGGCGCCGc -3'
miRNA:   3'- gaGCUaCGCGUGCUUCA--------CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 34739 0.72 0.348017
Target:  5'- gUCGAgccgaacacgGUGCGCGucGUGcCGGCGCCGc -3'
miRNA:   3'- gAGCUa---------CGCGUGCuuCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 15899 0.7 0.456551
Target:  5'- -cCGcGUGCGCGCGAc--GUGGCGCCGc -3'
miRNA:   3'- gaGC-UACGCGUGCUucaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 61403 0.7 0.456551
Target:  5'- -aCGAccucGCGCGCGAGGcgaagGCGGCgGCCGa -3'
miRNA:   3'- gaGCUa---CGCGUGCUUCa----CGCCG-UGGU- -5'
23946 3' -56.2 NC_005262.1 + 54047 0.7 0.466402
Target:  5'- aUCGA-GCGCACGGGcgacGaCGGCACCGu -3'
miRNA:   3'- gAGCUaCGCGUGCUUca--C-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 17545 0.69 0.506846
Target:  5'- -gCGGUcGCGCGCGAg--GCGGCAgCCGc -3'
miRNA:   3'- gaGCUA-CGCGUGCUucaCGCCGU-GGU- -5'
23946 3' -56.2 NC_005262.1 + 46133 0.69 0.506846
Target:  5'- -cCGAgGCGUAUGAGGaguaccaGCGGCGCCu -3'
miRNA:   3'- gaGCUaCGCGUGCUUCa------CGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 7782 0.69 0.527624
Target:  5'- -gCGAgcccGCGCAUGGAGagcuUGCGGCucuCCAu -3'
miRNA:   3'- gaGCUa---CGCGUGCUUC----ACGCCGu--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.