Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23946 | 3' | -56.2 | NC_005262.1 | + | 6082 | 0.68 | 0.570054 |
Target: 5'- -aUGcgGCGCGCGucGUgGCGGCcuACCGa -3' miRNA: 3'- gaGCuaCGCGUGCuuCA-CGCCG--UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 56887 | 0.69 | 0.538132 |
Target: 5'- -aCGA-GCGgAUGAAGUGgGGCACgCGg -3' miRNA: 3'- gaGCUaCGCgUGCUUCACgCCGUG-GU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 50915 | 0.69 | 0.537078 |
Target: 5'- -cUGAUGCGCACGAGcgucaccGUGCacGGCAgCGc -3' miRNA: 3'- gaGCUACGCGUGCUU-------CACG--CCGUgGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60620 | 0.69 | 0.527624 |
Target: 5'- --aGAUGCGCGCGAuuGGcgaccUGCGcauGCGCCAg -3' miRNA: 3'- gagCUACGCGUGCU--UC-----ACGC---CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 18671 | 0.69 | 0.517193 |
Target: 5'- -aCGuucugGCGCGCGguGUucGCGGCACCc -3' miRNA: 3'- gaGCua---CGCGUGCuuCA--CGCCGUGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 4651 | 0.69 | 0.486425 |
Target: 5'- cCUCcAUGCGCGCGgcGacGCGGC-CCGg -3' miRNA: 3'- -GAGcUACGCGUGCuuCa-CGCCGuGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 52594 | 0.67 | 0.624132 |
Target: 5'- uCUCGAUcuugcagguggcGCGCACGAucacgGCGGCGUCGu -3' miRNA: 3'- -GAGCUA------------CGCGUGCUuca--CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 52109 | 0.67 | 0.62848 |
Target: 5'- cCUCGGuuccgaaguUGCGCGCGAAgcucugccggccagcGUGCagcgcgacgccGGCGCCGc -3' miRNA: 3'- -GAGCU---------ACGCGUGCUU---------------CACG-----------CCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 47895 | 0.67 | 0.642613 |
Target: 5'- aUCGcgGCGCACGucGcGCGcacgcggcggaucaGCGCCAu -3' miRNA: 3'- gAGCuaCGCGUGCuuCaCGC--------------CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 63592 | 0.66 | 0.721042 |
Target: 5'- gCUCG-UGCGCGCGc--UGCGGaucguCACCGg -3' miRNA: 3'- -GAGCuACGCGUGCuucACGCC-----GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 56095 | 0.66 | 0.721042 |
Target: 5'- --aGAUGCaGCuCGAGGagGCGGCGCa- -3' miRNA: 3'- gagCUACG-CGuGCUUCa-CGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 27930 | 0.66 | 0.714712 |
Target: 5'- --aGGUGCGCGCGucgcgcGcacaaacaucugggcGGUcGCGGCGCCGa -3' miRNA: 3'- gagCUACGCGUGC------U---------------UCA-CGCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 1445 | 0.66 | 0.710475 |
Target: 5'- uUCGAcgGUGUAgGGcugcauGGUGCGGCACa- -3' miRNA: 3'- gAGCUa-CGCGUgCU------UCACGCCGUGgu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 42300 | 0.66 | 0.709414 |
Target: 5'- gCUCGGUGCGCcacugguacgcAUGGccgaugccccagcAGUaGCGGCACgCAa -3' miRNA: 3'- -GAGCUACGCG-----------UGCU-------------UCA-CGCCGUG-GU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 13234 | 0.66 | 0.704098 |
Target: 5'- gCUCGGgcUGCGguUGAacgGGUGCGcgagccugcucaucaGCACCAg -3' miRNA: 3'- -GAGCU--ACGCguGCU---UCACGC---------------CGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 14043 | 0.66 | 0.678367 |
Target: 5'- cCUCGGgcgcggGCGCcgccgGCGucGGUGCGGCuucgGCCGc -3' miRNA: 3'- -GAGCUa-----CGCG-----UGCu-UCACGCCG----UGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 57544 | 0.66 | 0.67621 |
Target: 5'- aUCGAggcggcaaagaccgUGCGCGCGgcGggcuucagcaucucgGCGGgCACCAa -3' miRNA: 3'- gAGCU--------------ACGCGUGCuuCa--------------CGCC-GUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 17126 | 0.67 | 0.65673 |
Target: 5'- aUCG--GCGgGCGucGGUGcCGGCGCCAu -3' miRNA: 3'- gAGCuaCGCgUGCu-UCAC-GCCGUGGU- -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 60371 | 0.67 | 0.65673 |
Target: 5'- -cCGA-GCGCGCuGAAGcgaUGCGGCucGCCg -3' miRNA: 3'- gaGCUaCGCGUG-CUUC---ACGCCG--UGGu -5' |
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23946 | 3' | -56.2 | NC_005262.1 | + | 61302 | 0.67 | 0.645873 |
Target: 5'- aUCGGguUGCuGCugGucgccAAGcGCGGCACCAc -3' miRNA: 3'- gAGCU--ACG-CGugC-----UUCaCGCCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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