miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 27054 0.66 0.721042
Target:  5'- aUCGucGUGCGCA-GAAcugcgcccGCGGCGCCAg -3'
miRNA:   3'- gAGC--UACGCGUgCUUca------CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60213 0.68 0.591594
Target:  5'- -cCGG-GCGCACGAGGaauCGGaCACCAa -3'
miRNA:   3'- gaGCUaCGCGUGCUUCac-GCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 30505 0.68 0.591594
Target:  5'- uUCGGcgcccggcgUGCGCGCGA--UGCGGUACg- -3'
miRNA:   3'- gAGCU---------ACGCGUGCUucACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 18113 1.08 0.001029
Target:  5'- cCUCGAUGCGCACGAAGUGCGGCACCAu -3'
miRNA:   3'- -GAGCUACGCGUGCUUCACGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 1445 0.66 0.710475
Target:  5'- uUCGAcgGUGUAgGGcugcauGGUGCGGCACa- -3'
miRNA:   3'- gAGCUa-CGCGUgCU------UCACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 42300 0.66 0.709414
Target:  5'- gCUCGGUGCGCcacugguacgcAUGGccgaugccccagcAGUaGCGGCACgCAa -3'
miRNA:   3'- -GAGCUACGCG-----------UGCU-------------UCA-CGCCGUG-GU- -5'
23946 3' -56.2 NC_005262.1 + 14043 0.66 0.678367
Target:  5'- cCUCGGgcgcggGCGCcgccgGCGucGGUGCGGCuucgGCCGc -3'
miRNA:   3'- -GAGCUa-----CGCG-----UGCu-UCACGCCG----UGGU- -5'
23946 3' -56.2 NC_005262.1 + 57544 0.66 0.67621
Target:  5'- aUCGAggcggcaaagaccgUGCGCGCGgcGggcuucagcaucucgGCGGgCACCAa -3'
miRNA:   3'- gAGCU--------------ACGCGUGCuuCa--------------CGCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 61302 0.67 0.645873
Target:  5'- aUCGGguUGCuGCugGucgccAAGcGCGGCACCAc -3'
miRNA:   3'- gAGCU--ACG-CGugC-----UUCaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 8661 0.68 0.59592
Target:  5'- gCUCGAggaauucGCGUGCGAacugcgcgagcauguGGUuCGGCACCAc -3'
miRNA:   3'- -GAGCUa------CGCGUGCU---------------UCAcGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52109 0.67 0.62848
Target:  5'- cCUCGGuuccgaaguUGCGCGCGAAgcucugccggccagcGUGCagcgcgacgccGGCGCCGc -3'
miRNA:   3'- -GAGCU---------ACGCGUGCUU---------------CACG-----------CCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60371 0.67 0.65673
Target:  5'- -cCGA-GCGCGCuGAAGcgaUGCGGCucGCCg -3'
miRNA:   3'- gaGCUaCGCGUG-CUUC---ACGCCG--UGGu -5'
23946 3' -56.2 NC_005262.1 + 63592 0.66 0.721042
Target:  5'- gCUCG-UGCGCGCGc--UGCGGaucguCACCGg -3'
miRNA:   3'- -GAGCuACGCGUGCuucACGCC-----GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52594 0.67 0.624132
Target:  5'- uCUCGAUcuugcagguggcGCGCACGAucacgGCGGCGUCGu -3'
miRNA:   3'- -GAGCUA------------CGCGUGCUuca--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 56095 0.66 0.721042
Target:  5'- --aGAUGCaGCuCGAGGagGCGGCGCa- -3'
miRNA:   3'- gagCUACG-CGuGCUUCa-CGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 17126 0.67 0.65673
Target:  5'- aUCG--GCGgGCGucGGUGcCGGCGCCAu -3'
miRNA:   3'- gAGCuaCGCgUGCu-UCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 32023 0.67 0.624132
Target:  5'- -aCGAUcGCGCGCGA--UGCGGCggauguuguggACCGu -3'
miRNA:   3'- gaGCUA-CGCGUGCUucACGCCG-----------UGGU- -5'
23946 3' -56.2 NC_005262.1 + 56764 0.68 0.591594
Target:  5'- -gCGAUGCGCGCGAAGgaccUGaCGucCACCGa -3'
miRNA:   3'- gaGCUACGCGUGCUUC----AC-GCc-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 27930 0.66 0.714712
Target:  5'- --aGGUGCGCGCGucgcgcGcacaaacaucugggcGGUcGCGGCGCCGa -3'
miRNA:   3'- gagCUACGCGUGC------U---------------UCA-CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 13234 0.66 0.704098
Target:  5'- gCUCGGgcUGCGguUGAacgGGUGCGcgagccugcucaucaGCACCAg -3'
miRNA:   3'- -GAGCU--ACGCguGCU---UCACGC---------------CGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.