miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 3' -56.2 NC_005262.1 + 56764 0.68 0.591594
Target:  5'- -gCGAUGCGCGCGAAGgaccUGaCGucCACCGa -3'
miRNA:   3'- gaGCUACGCGUGCUUC----AC-GCc-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60371 0.67 0.65673
Target:  5'- -cCGA-GCGCGCuGAAGcgaUGCGGCucGCCg -3'
miRNA:   3'- gaGCUaCGCGUG-CUUC---ACGCCG--UGGu -5'
23946 3' -56.2 NC_005262.1 + 63248 0.73 0.31617
Target:  5'- -gCGGUcGCGCACGAAGUGuCaGCACUg -3'
miRNA:   3'- gaGCUA-CGCGUGCUUCAC-GcCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 11928 0.7 0.476361
Target:  5'- gCUCGGUcGUGCucGCGucGUucGCGGCGCCGc -3'
miRNA:   3'- -GAGCUA-CGCG--UGCuuCA--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 30505 0.68 0.591594
Target:  5'- uUCGGcgcccggcgUGCGCGCGA--UGCGGUACg- -3'
miRNA:   3'- gAGCU---------ACGCGUGCUucACGCCGUGgu -5'
23946 3' -56.2 NC_005262.1 + 17126 0.67 0.65673
Target:  5'- aUCG--GCGgGCGucGGUGcCGGCGCCAu -3'
miRNA:   3'- gAGCuaCGCgUGCu-UCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 4651 0.69 0.486425
Target:  5'- cCUCcAUGCGCGCGgcGacGCGGC-CCGg -3'
miRNA:   3'- -GAGcUACGCGUGCuuCa-CGCCGuGGU- -5'
23946 3' -56.2 NC_005262.1 + 57544 0.66 0.67621
Target:  5'- aUCGAggcggcaaagaccgUGCGCGCGgcGggcuucagcaucucgGCGGgCACCAa -3'
miRNA:   3'- gAGCU--------------ACGCGUGCuuCa--------------CGCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 14043 0.66 0.678367
Target:  5'- cCUCGGgcgcggGCGCcgccgGCGucGGUGCGGCuucgGCCGc -3'
miRNA:   3'- -GAGCUa-----CGCG-----UGCu-UCACGCCG----UGGU- -5'
23946 3' -56.2 NC_005262.1 + 8661 0.68 0.59592
Target:  5'- gCUCGAggaauucGCGUGCGAacugcgcgagcauguGGUuCGGCACCAc -3'
miRNA:   3'- -GAGCUa------CGCGUGCU---------------UCAcGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 47081 0.68 0.580803
Target:  5'- -cCGGUGCGCACaGggGUauCGaGCACCu -3'
miRNA:   3'- gaGCUACGCGUG-CuuCAc-GC-CGUGGu -5'
23946 3' -56.2 NC_005262.1 + 50915 0.69 0.537078
Target:  5'- -cUGAUGCGCACGAGcgucaccGUGCacGGCAgCGc -3'
miRNA:   3'- gaGCUACGCGUGCUU-------CACG--CCGUgGU- -5'
23946 3' -56.2 NC_005262.1 + 11147 0.7 0.466402
Target:  5'- -aCGAUGCGCACGuucugcucUGCGGUcgcgcGCCAc -3'
miRNA:   3'- gaGCUACGCGUGCuuc-----ACGCCG-----UGGU- -5'
23946 3' -56.2 NC_005262.1 + 60401 0.72 0.373367
Target:  5'- uCUCGAUGUaccuggacggGCACGggGcgcauagcaucgUGCGGCAUCu -3'
miRNA:   3'- -GAGCUACG----------CGUGCuuC------------ACGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 22381 0.74 0.259198
Target:  5'- gUCGgcGCaUACGAGGUGcCGGCGCCGa -3'
miRNA:   3'- gAGCuaCGcGUGCUUCAC-GCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 60213 0.68 0.591594
Target:  5'- -cCGG-GCGCACGAGGaauCGGaCACCAa -3'
miRNA:   3'- gaGCUaCGCGUGCUUCac-GCC-GUGGU- -5'
23946 3' -56.2 NC_005262.1 + 61302 0.67 0.645873
Target:  5'- aUCGGguUGCuGCugGucgccAAGcGCGGCACCAc -3'
miRNA:   3'- gAGCU--ACG-CGugC-----UUCaCGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 52594 0.67 0.624132
Target:  5'- uCUCGAUcuugcagguggcGCGCACGAucacgGCGGCGUCGu -3'
miRNA:   3'- -GAGCUA------------CGCGUGCUuca--CGCCGUGGU- -5'
23946 3' -56.2 NC_005262.1 + 4551 0.66 0.709414
Target:  5'- aUCGugcGCGCGCGGcgcaucucgcgccAGcgGCGGCGCUg -3'
miRNA:   3'- gAGCua-CGCGUGCU-------------UCa-CGCCGUGGu -5'
23946 3' -56.2 NC_005262.1 + 32856 0.68 0.570054
Target:  5'- uUCGGccCGCACG---UGCGGCGCCGa -3'
miRNA:   3'- gAGCUacGCGUGCuucACGCCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.