miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23946 5' -55.3 NC_005262.1 + 7522 0.66 0.76212
Target:  5'- cAUCgggcagGUUCGGCGGcGCgUCGgCGCG-CUCg -3'
miRNA:   3'- -UAGa-----CAAGCUGCU-CG-AGC-GCGCaGAG- -5'
23946 5' -55.3 NC_005262.1 + 46751 0.66 0.751874
Target:  5'- ---cGcgCGACGAGCUCGCGgagcugcuuuucCGcCUCg -3'
miRNA:   3'- uagaCaaGCUGCUCGAGCGC------------GCaGAG- -5'
23946 5' -55.3 NC_005262.1 + 52567 0.66 0.741506
Target:  5'- gAUCg--UCGcuguCGAGCUCGgCGCGgcUCUCg -3'
miRNA:   3'- -UAGacaAGCu---GCUCGAGC-GCGC--AGAG- -5'
23946 5' -55.3 NC_005262.1 + 55472 0.66 0.741506
Target:  5'- uGUC-GUUCGAgGAGCUgG-GCGUCg- -3'
miRNA:   3'- -UAGaCAAGCUgCUCGAgCgCGCAGag -5'
23946 5' -55.3 NC_005262.1 + 52218 0.66 0.741506
Target:  5'- -cCUGcaCGACGAGCUCauUGCGUCg- -3'
miRNA:   3'- uaGACaaGCUGCUCGAGc-GCGCAGag -5'
23946 5' -55.3 NC_005262.1 + 49333 0.66 0.731028
Target:  5'- --aUGacCGACGAGCaggCGCGCGccgcgCUCg -3'
miRNA:   3'- uagACaaGCUGCUCGa--GCGCGCa----GAG- -5'
23946 5' -55.3 NC_005262.1 + 20940 0.66 0.731028
Target:  5'- -----gUCGACGAGCccgCGCGCGUg-- -3'
miRNA:   3'- uagacaAGCUGCUCGa--GCGCGCAgag -5'
23946 5' -55.3 NC_005262.1 + 14345 0.66 0.720453
Target:  5'- ---aGUUgCGACGuGCUugCGCGCGUCg- -3'
miRNA:   3'- uagaCAA-GCUGCuCGA--GCGCGCAGag -5'
23946 5' -55.3 NC_005262.1 + 16620 0.66 0.70979
Target:  5'- cAUCUGguucuugUCGACGAaaGUggUGCGCGcCUCg -3'
miRNA:   3'- -UAGACa------AGCUGCU--CGa-GCGCGCaGAG- -5'
23946 5' -55.3 NC_005262.1 + 54911 0.67 0.692577
Target:  5'- ---aGUUCGACG-GCUCGCaccugacgcugccggGCGUgUCg -3'
miRNA:   3'- uagaCAAGCUGCuCGAGCG---------------CGCAgAG- -5'
23946 5' -55.3 NC_005262.1 + 37369 0.67 0.688249
Target:  5'- cGUCUcgUCGAaccaGAGCagcgggaacgcgUCGCGCGUCUg -3'
miRNA:   3'- -UAGAcaAGCUg---CUCG------------AGCGCGCAGAg -5'
23946 5' -55.3 NC_005262.1 + 54772 0.67 0.666494
Target:  5'- cUCUGcaCGuuACGGGUUCGUGCGUC-Cg -3'
miRNA:   3'- uAGACaaGC--UGCUCGAGCGCGCAGaG- -5'
23946 5' -55.3 NC_005262.1 + 32599 0.67 0.666494
Target:  5'- -cCUGacuugUCGGCGAGCgugaUCGuCGCGUCg- -3'
miRNA:   3'- uaGACa----AGCUGCUCG----AGC-GCGCAGag -5'
23946 5' -55.3 NC_005262.1 + 18735 0.67 0.644611
Target:  5'- cUCaGcUUCGGCGcGGCUCgGCGCGUCg- -3'
miRNA:   3'- uAGaC-AAGCUGC-UCGAG-CGCGCAGag -5'
23946 5' -55.3 NC_005262.1 + 13049 0.69 0.578997
Target:  5'- cGUCUGc---ACGAuCUCGUGCGUCUCg -3'
miRNA:   3'- -UAGACaagcUGCUcGAGCGCGCAGAG- -5'
23946 5' -55.3 NC_005262.1 + 60379 0.69 0.568163
Target:  5'- -gCUGaagCGAUGcGGCUCGC-CGUCUCg -3'
miRNA:   3'- uaGACaa-GCUGC-UCGAGCGcGCAGAG- -5'
23946 5' -55.3 NC_005262.1 + 34121 0.69 0.536002
Target:  5'- ---cGUUCGACGAGCgcgcacCGCGCaUCUUc -3'
miRNA:   3'- uagaCAAGCUGCUCGa-----GCGCGcAGAG- -5'
23946 5' -55.3 NC_005262.1 + 49411 0.69 0.525419
Target:  5'- gGUCUGUUCGGCGgcaugGGCgacCGCGCa-CUCg -3'
miRNA:   3'- -UAGACAAGCUGC-----UCGa--GCGCGcaGAG- -5'
23946 5' -55.3 NC_005262.1 + 43399 0.69 0.525419
Target:  5'- cAUCgg--CGGCGAGCUCaacgGCGCGgcgCUCa -3'
miRNA:   3'- -UAGacaaGCUGCUCGAG----CGCGCa--GAG- -5'
23946 5' -55.3 NC_005262.1 + 62909 0.7 0.514917
Target:  5'- ------cCGACGAGCUgGCGCGcaaUCUCa -3'
miRNA:   3'- uagacaaGCUGCUCGAgCGCGC---AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.