Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23946 | 5' | -55.3 | NC_005262.1 | + | 18147 | 1.07 | 0.001604 |
Target: 5'- gAUCUGUUCGACGAGCUCGCGCGUCUCc -3' miRNA: 3'- -UAGACAAGCUGCUCGAGCGCGCAGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 46170 | 0.75 | 0.262707 |
Target: 5'- -gCUGcUCGGCGAGCUCGCGCugcuggcgCUCc -3' miRNA: 3'- uaGACaAGCUGCUCGAGCGCGca------GAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 30063 | 0.71 | 0.424897 |
Target: 5'- ----cUUCGGCGAGCuUCGCcuucaGCGUCUCg -3' miRNA: 3'- uagacAAGCUGCUCG-AGCG-----CGCAGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 16378 | 0.7 | 0.5045 |
Target: 5'- uUCUGggCGuCGAGCUugcuuuucUGCGCGUCg- -3' miRNA: 3'- uAGACaaGCuGCUCGA--------GCGCGCAGag -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 62909 | 0.7 | 0.514917 |
Target: 5'- ------cCGACGAGCUgGCGCGcaaUCUCa -3' miRNA: 3'- uagacaaGCUGCUCGAgCGCGC---AGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 43399 | 0.69 | 0.525419 |
Target: 5'- cAUCgg--CGGCGAGCUCaacgGCGCGgcgCUCa -3' miRNA: 3'- -UAGacaaGCUGCUCGAG----CGCGCa--GAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 49411 | 0.69 | 0.525419 |
Target: 5'- gGUCUGUUCGGCGgcaugGGCgacCGCGCa-CUCg -3' miRNA: 3'- -UAGACAAGCUGC-----UCGa--GCGCGcaGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 34121 | 0.69 | 0.536002 |
Target: 5'- ---cGUUCGACGAGCgcgcacCGCGCaUCUUc -3' miRNA: 3'- uagaCAAGCUGCUCGa-----GCGCGcAGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 60379 | 0.69 | 0.568163 |
Target: 5'- -gCUGaagCGAUGcGGCUCGC-CGUCUCg -3' miRNA: 3'- uaGACaa-GCUGC-UCGAGCGcGCAGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 13049 | 0.69 | 0.578997 |
Target: 5'- cGUCUGc---ACGAuCUCGUGCGUCUCg -3' miRNA: 3'- -UAGACaagcUGCUcGAGCGCGCAGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 18735 | 0.67 | 0.644611 |
Target: 5'- cUCaGcUUCGGCGcGGCUCgGCGCGUCg- -3' miRNA: 3'- uAGaC-AAGCUGC-UCGAG-CGCGCAGag -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 32599 | 0.67 | 0.666494 |
Target: 5'- -cCUGacuugUCGGCGAGCgugaUCGuCGCGUCg- -3' miRNA: 3'- uaGACa----AGCUGCUCG----AGC-GCGCAGag -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 54772 | 0.67 | 0.666494 |
Target: 5'- cUCUGcaCGuuACGGGUUCGUGCGUC-Cg -3' miRNA: 3'- uAGACaaGC--UGCUCGAGCGCGCAGaG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 37369 | 0.67 | 0.688249 |
Target: 5'- cGUCUcgUCGAaccaGAGCagcgggaacgcgUCGCGCGUCUg -3' miRNA: 3'- -UAGAcaAGCUg---CUCG------------AGCGCGCAGAg -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 54911 | 0.67 | 0.692577 |
Target: 5'- ---aGUUCGACG-GCUCGCaccugacgcugccggGCGUgUCg -3' miRNA: 3'- uagaCAAGCUGCuCGAGCG---------------CGCAgAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 16620 | 0.66 | 0.70979 |
Target: 5'- cAUCUGguucuugUCGACGAaaGUggUGCGCGcCUCg -3' miRNA: 3'- -UAGACa------AGCUGCU--CGa-GCGCGCaGAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 14345 | 0.66 | 0.720453 |
Target: 5'- ---aGUUgCGACGuGCUugCGCGCGUCg- -3' miRNA: 3'- uagaCAA-GCUGCuCGA--GCGCGCAGag -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 49333 | 0.66 | 0.731028 |
Target: 5'- --aUGacCGACGAGCaggCGCGCGccgcgCUCg -3' miRNA: 3'- uagACaaGCUGCUCGa--GCGCGCa----GAG- -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 20940 | 0.66 | 0.731028 |
Target: 5'- -----gUCGACGAGCccgCGCGCGUg-- -3' miRNA: 3'- uagacaAGCUGCUCGa--GCGCGCAgag -5' |
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23946 | 5' | -55.3 | NC_005262.1 | + | 55472 | 0.66 | 0.741506 |
Target: 5'- uGUC-GUUCGAgGAGCUgG-GCGUCg- -3' miRNA: 3'- -UAGaCAAGCUgCUCGAgCgCGCAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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